GBrowse Details

Vigan.08G251400.01

Basic Information:
Name: Vigan.08G251400.01
Multiple alignment
Variant Information
Position: Chr08:25002084..25003228 (+ strand)
Length: 1145
Functional Information:
Description: Similar to Indole-3-acetic acid-induced protein ARG2. [P32292, Vigna radiata var. radiata]
GO: Biological Process: response to stress (GO:0006950)
InterPro: Late embryogenesis abundant protein, LEA-5 (IPR004926)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:331.03,202.87,144.60,816.49,435.58,15.12,760.53,94.00
Arabidopsis thaliana homolog: AT4G02380.1
Automatic updates:
Name: NM_001376200 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata indole-3-acetic acid-induced protein ARG2 (ARG2), mRNA.
PubMed ID: 26177103 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:25002084..25002408 (+ strand)
Length: 325
Type: five_prime_UTR
Position: Chr08:25002409..25002482 (+ strand)
Length: 74
Type: CDS
Position: Chr08:25002706..25002937 (+ strand)
Length: 232
Type: CDS
Position: Chr08:25002938..25003228 (+ strand)
Length: 291
Type: three_prime_UTR


>Vigan.08G251400.01
AAATAATTGA TTTTAGGAAA ATGAATTAGA AGGTGAAAAA GAAAGGCGGG TATAGAATTA AATGGCTCTA CAAATGAACG
AACGGGTGTG GTGTGAAAGA GAGGAATTTT CTAAGGAGGC TCGTATTTCT TTTTCCTTCT TCTTCGTCTA TATATACCGG
ACCACTTCTC TCTGCCACTT CATAACAAAA TAACTTGCCT TCAGGAACGT TCTAGACCAC AGAGGATTCT CTTGTCTTCT
GTGGAGAGCT TGTTTTCATT TCTTCATTCG CATCCGAGGA ACAAGCTTTC CGCAGTTGAA CACCCTTTCG TCCACTCAAT
CACCCATGGC TCGCTCTTTC ACTAACGTTA AGGTTCTCTC TGCTCTTGTG GCCGACGGAT TCTCCAACAC TCCAACCAGG
CGTGGGTTTG CGGCGGCGGC GGCGGCGGCG GCGACACAGA GCGCAAGCAG AGGAGGTGCC TCCATCAGCG GCAATATGGT
TCCAAAATCA GGGGAAGAGA AGGTGAGAGG TGCTGAAAAG GTTTCGTGGG TCCCAGACCC TGTGACCGGT TACTACAGAC
CAGAGAACAC CAACGAGATT GATGTTGCTG ACCTGCGAGC TACGGTTTTG GGCGGAAAAT TCAACCACTA ATTTCAACTT
GAAGACAGAA CCTCTTTGGT CACTTATACG TTAGATGTAT CTCGAAGTTC ACAGAACCTT CGGGGATTAT TCACTATGAG
GCAATCATCT ACATACAGTT GTTGTATTTC TCTCTACAGA ATTAAGACTT TGTCATCTCC AGTTGAGAAC TCGTAACTAT
GTTTTGCTGT ATTCTCTTTG GAAAATAACA GGAGTTATTT GTAACTTTCT AAGCAAACTT CAAATCTTCT TTGTCCATTT
TTTGTTTTTT TTTTTCACGT AACTATGCTA TTTTCTTCCG TA

>Vigan.08G251400.01
ATGGCTCGCT CTTTCACTAA CGTTAAGGTT CTCTCTGCTC TTGTGGCCGA CGGATTCTCC AACACTCCAA CCAGGCGTGG
GTTTGCGGCG GCGGCGGCGG CGGCGGCGAC ACAGAGCGCA AGCAGAGGAG GTGCCTCCAT CAGCGGCAAT ATGGTTCCAA
AATCAGGGGA AGAGAAGGTG AGAGGTGCTG AAAAGGTTTC GTGGGTCCCA GACCCTGTGA CCGGTTACTA CAGACCAGAG
AACACCAACG AGATTGATGT TGCTGACCTG CGAGCTACGG TTTTGGGCGG AAAATTCAAC CACTAA

>Vigan.08G251400.01
MARSFTNVKV LSALVADGFS NTPTRRGFAA AAAAAATQSA SRGGASISGN MVPKSGEEKV RGAEKVSWVP DPVTGYYRPE
NTNEIDVADL RATVLGGKFN H*