GBrowse Details

Vigan.08G253200.01

Basic Information:
Name: Vigan.08G253200.01
Multiple alignment
Variant Information
Position: Chr08:25300109..25302614 (+ strand)
Length: 2506
Functional Information:
Description: Similar to Uncharacterized protein. [I1JBJ9, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
InterPro: Glycoside hydrolase, family 9 (IPR001701)
Six-hairpin glycosidase-like (IPR008928)
Six-hairpin glycosidase (IPR012341)
Glycoside hydrolase, family 9, active site (IPR018221)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.10,13.85,3.18,1.22,8.50,1.14,4.97
Arabidopsis thaliana homolog: AT1G02800.1, AT1G22880.1, AT1G23210.1, AT1G70710.1, AT1G71380.1, AT4G02290.1, AT4G39000.1, AT4G39010.1
Automatic updates:
Name: NM_001353415 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max alpha family endo-beta-1,4-glucanase (CEL7), mRNA.
PubMed ID: 24844661 NCBI(pubmed)
17916637 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:25300109..25300237 (+ strand)
Length: 129
Type: five_prime_UTR
Position: Chr08:25300238..25300489 (+ strand)
Length: 252
Type: CDS
Position: Chr08:25300595..25300801 (+ strand)
Length: 207
Type: CDS
Position: Chr08:25300922..25301122 (+ strand)
Length: 201
Type: CDS
Position: Chr08:25301219..25301311 (+ strand)
Length: 93
Type: CDS
Position: Chr08:25301408..25301569 (+ strand)
Length: 162
Type: CDS
Position: Chr08:25301665..25301776 (+ strand)
Length: 112
Type: CDS
Position: Chr08:25301859..25302022 (+ strand)
Length: 164
Type: CDS
Position: Chr08:25302117..25302449 (+ strand)
Length: 333
Type: CDS
Position: Chr08:25302450..25302614 (+ strand)
Length: 165
Type: three_prime_UTR


>Vigan.08G253200.01
GCAGGGCCTT AGAGAGGCCG CGGCAGCTTT TGCTTTATAA AAATCAGAGA CTGAACGTCA AAACAGCACA CACTCTTGAC
AGTGTGAATT GCAGGTTAGT GTTTGGTCGT TTCACATTCC CTCTTCAAAA TGACTTTCTC CCTTTCCCTC ACCATTCTGC
TACCCCTTCT CTCTGTTTTT CTGCTACATG CAAATGCCTC CCCACTCCAT TACAATCACC CCATTCACCA TCGCCACCCT
CGTTTTGCCA CTCATGACTA CAGAGATGCT CTCACCAAAT CCATTCTCTT CTTTGAAGGC CAGAGGTCAG GGAAGCTCCC
TCCTAACCAG AGAATGTCTT GGAGGAGGGA CTCTGGTCTT TCTGATGGCG CCGCCCTGCG TGTTGATTTG GTCGGTGGGT
ACTATGATGC TGGGGACAAT GTCAAATTTG GCTTCCCCAT GGCCTTCACC ATCACCATGC TCTCATGGAG CGTTATTGAG
TTTGGTGGGC TTATGAAAGG CGAGTTGCAG AATGCCAGAG TGGCCATTCG CTGGGCCACT GATTATCTTC TCAAAGCTAC
TGCACATCCC AACACCATTT ATGTTCAGGT GGGGGATGCT AAGAAGGACC ATTCTTGTTG GGAGAGACCA GAGGACATGG
ACACTCCAAG AAGTGTGTTC AAAATAGATG CAAACACACC TGGTTCAGAA GTTGCCGCTG AAACTGCTGC AGCTCTTGCA
GCTGCTTCTC TGGTTTTTAG AAGAACTGAC CCCACATACT CAAAAGTTTT AGCTAGAAGG GCCATCAGGG TATTCCAGTT
TGCTGATAAA TACAGAGGAT CCTACAGCAA TGCCTTGAAA CCCTTTGTGT GCCCCTTCTA TTGCTCTTAC TCTGGTTATC
AGGATGAGCT GTTGTGGGGT GCTGCCTGGC TGCACAAGGC TACCAAGAAT CCAATGTACC TAAACTACAT TAAAGTTAAT
GGCCAGATCC TTGGGGCTGC AGAGTTTGAC AACACCTTTG GGTGGGATAA CAAGCATGCC GGAGCAAGAA TACTTCTCTC
CAAGGAATTC CTGGTTCAAA GGGTACAATC CCTCCATGAC TACAAGGGGC ATGCGGACAA TTTCGTTTGT TCTCTAATTC
CTGGGACCTC TTTCTCTTCC ACCCAGTATA CACCAGGTGG GCTACTTTTT AAGATGAGTG ATAGCAACAT GCAGTACGTC
ACATCCACCT CCTTCCTGCT GTTAACATAT GCGAAATACT TGACCTCAGC TCATACGGTT GTTAACTGTG GCGGAATGGC
AGTAACACCA AAGAGGCTCC GGTCAATAGC TAAGAAACAG GTAGATTACT TGCTTGGAGA CAACCCCTTA AAGATGTCGT
ACATGGTGGG GTATGGTGGA AGATACCCAA GAAGGATACA CCACAGGGGT TCATCTCTAC CGTCCATGGG TGTACACCCT
GGAAAGATCC AATGTCGTGC AGGCTTTAGT GTGATGAATT CACAATCCCC GAACCCAAAC ATTCTAGTGG GGGCTATTGT
GGGTGGACCG GACCAACATG ATAGGTTCCC AGATGAACGG TCAGATTATG AGCAATCAGA GCCAGCCACA TACATAAACT
CACCCCTTGT AGGAGCACTG GCGTATCTAG CTCACTCATT TGGTCAAATC TAGACTCCAA CTAATTTGAG ACAACCAGTA
AGCCTTGTAA ACTTGTTCAC AATGTAACCT TATTGCTGCC ACGCTTATGT ACGTGTATGT ATGTATGTTC TGTCCAGTGA
TAGTGTGTTC AACTTTTCAA GAAATTGAAA CTAAGTTACC AGTGTTTTGT TTTTGCTA

>Vigan.08G253200.01
ATGACTTTCT CCCTTTCCCT CACCATTCTG CTACCCCTTC TCTCTGTTTT TCTGCTACAT GCAAATGCCT CCCCACTCCA
TTACAATCAC CCCATTCACC ATCGCCACCC TCGTTTTGCC ACTCATGACT ACAGAGATGC TCTCACCAAA TCCATTCTCT
TCTTTGAAGG CCAGAGGTCA GGGAAGCTCC CTCCTAACCA GAGAATGTCT TGGAGGAGGG ACTCTGGTCT TTCTGATGGC
GCCGCCCTGC GTGTTGATTT GGTCGGTGGG TACTATGATG CTGGGGACAA TGTCAAATTT GGCTTCCCCA TGGCCTTCAC
CATCACCATG CTCTCATGGA GCGTTATTGA GTTTGGTGGG CTTATGAAAG GCGAGTTGCA GAATGCCAGA GTGGCCATTC
GCTGGGCCAC TGATTATCTT CTCAAAGCTA CTGCACATCC CAACACCATT TATGTTCAGG TGGGGGATGC TAAGAAGGAC
CATTCTTGTT GGGAGAGACC AGAGGACATG GACACTCCAA GAAGTGTGTT CAAAATAGAT GCAAACACAC CTGGTTCAGA
AGTTGCCGCT GAAACTGCTG CAGCTCTTGC AGCTGCTTCT CTGGTTTTTA GAAGAACTGA CCCCACATAC TCAAAAGTTT
TAGCTAGAAG GGCCATCAGG GTATTCCAGT TTGCTGATAA ATACAGAGGA TCCTACAGCA ATGCCTTGAA ACCCTTTGTG
TGCCCCTTCT ATTGCTCTTA CTCTGGTTAT CAGGATGAGC TGTTGTGGGG TGCTGCCTGG CTGCACAAGG CTACCAAGAA
TCCAATGTAC CTAAACTACA TTAAAGTTAA TGGCCAGATC CTTGGGGCTG CAGAGTTTGA CAACACCTTT GGGTGGGATA
ACAAGCATGC CGGAGCAAGA ATACTTCTCT CCAAGGAATT CCTGGTTCAA AGGGTACAAT CCCTCCATGA CTACAAGGGG
CATGCGGACA ATTTCGTTTG TTCTCTAATT CCTGGGACCT CTTTCTCTTC CACCCAGTAT ACACCAGGTG GGCTACTTTT
TAAGATGAGT GATAGCAACA TGCAGTACGT CACATCCACC TCCTTCCTGC TGTTAACATA TGCGAAATAC TTGACCTCAG
CTCATACGGT TGTTAACTGT GGCGGAATGG CAGTAACACC AAAGAGGCTC CGGTCAATAG CTAAGAAACA GGTAGATTAC
TTGCTTGGAG ACAACCCCTT AAAGATGTCG TACATGGTGG GGTATGGTGG AAGATACCCA AGAAGGATAC ACCACAGGGG
TTCATCTCTA CCGTCCATGG GTGTACACCC TGGAAAGATC CAATGTCGTG CAGGCTTTAG TGTGATGAAT TCACAATCCC
CGAACCCAAA CATTCTAGTG GGGGCTATTG TGGGTGGACC GGACCAACAT GATAGGTTCC CAGATGAACG GTCAGATTAT
GAGCAATCAG AGCCAGCCAC ATACATAAAC TCACCCCTTG TAGGAGCACT GGCGTATCTA GCTCACTCAT TTGGTCAAAT
CTAG

>Vigan.08G253200.01
MTFSLSLTIL LPLLSVFLLH ANASPLHYNH PIHHRHPRFA THDYRDALTK SILFFEGQRS GKLPPNQRMS WRRDSGLSDG
AALRVDLVGG YYDAGDNVKF GFPMAFTITM LSWSVIEFGG LMKGELQNAR VAIRWATDYL LKATAHPNTI YVQVGDAKKD
HSCWERPEDM DTPRSVFKID ANTPGSEVAA ETAAALAAAS LVFRRTDPTY SKVLARRAIR VFQFADKYRG SYSNALKPFV
CPFYCSYSGY QDELLWGAAW LHKATKNPMY LNYIKVNGQI LGAAEFDNTF GWDNKHAGAR ILLSKEFLVQ RVQSLHDYKG
HADNFVCSLI PGTSFSSTQY TPGGLLFKMS DSNMQYVTST SFLLLTYAKY LTSAHTVVNC GGMAVTPKRL RSIAKKQVDY
LLGDNPLKMS YMVGYGGRYP RRIHHRGSSL PSMGVHPGKI QCRAGFSVMN SQSPNPNILV GAIVGGPDQH DRFPDERSDY
EQSEPATYIN SPLVGALAYL AHSFGQI*