GBrowse Details

Vigan.08G256900.01

Basic Information:
Name: Vigan.08G256900.01
Multiple alignment
Variant Information
Position: Chr08:25978813..25982626 (+ strand)
Length: 3814
Functional Information:
Description: Similar to Expressed protein. [Q52ZI4, Pisum sativum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.75,3.59,3.86,10.11,2.20,5.88,1.97,5.44
Arabidopsis thaliana homolog: AT2G25920.1
Automatic updates:
Name: NM_001255896 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100775405 (LOC100775405), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:25978813..25979028 (+ strand)
Length: 216
Type: five_prime_UTR
Position: Chr08:25979029..25979154 (+ strand)
Length: 126
Type: CDS
Position: Chr08:25979597..25979694 (+ strand)
Length: 98
Type: CDS
Position: Chr08:25981460..25981922 (+ strand)
Length: 463
Type: CDS
Position: Chr08:25981923..25982626 (+ strand)
Length: 704
Type: three_prime_UTR


>Vigan.08G256900.01
GAAATAGAGC AAAGAGAACA TAGTAGGTTT CCCTCCAATC GTTTTTCTGA GGCCTCAAAA CCGAACCAAC TCTGATACTG
CTATGTTTCA CTGTGAAGGA AGACCGAACG CGAAGCGTAA GCCTTCTCTG CACAATAAAT TAGGGTTTCA GCATTGAACA
GACTCTTCTT CCCACCCCAA AGAGAAAGTC TTGGTTTAGA TGAGTTGGTC TGAACAATGG GTTCTGATTC CAATTTGGGA
GGGACACCCT CAACATCCTC GCCCAGTGCC AAGCGCACCA GAGATCCTGA AGAGGAAGTT TACCTCGACA ATCTTCGCTC
CCACAAACGT TACCTAAGCG AGATAATGGC ATCCAGTCTC AATGGATTGA CAGTTGGGGA CTCGCTTCCT GATAATCTCA
TGGAATCTCC GGCAAGGTCT GAAAGCGTGT TCTCTTTCAG AGATGATATA TCTTTACAAT ATTCACCTAT GTCAGAAGAT
TCAGATGACT TGAGGTTTTG TGAGACTCCT GTGCACAGTT GTTCGTCCCA GCCCGACAGT CTTCCCAGTA GTCCAGTTTC
TTCTCCACAT AGGTACCATA AGTCGCAGAA TGTATTATCT TCGGCACCTT CCTCAAGTTC AAATGCTTCT CATGGCTCAA
CCGTTTCCAC TGCAACTTGC CCCCAGCCTC GTCAGCGAGG GTCAGATTCT GAAGGTCGCT TCCCATCATC TCCAAGTGAT
ATATGCCACT CAGCTGACTT GAGAAGAGCT GCACTTCTAA GATCTGTGCA GATGAGAACA CAACCATCCT CTGCATCTTT
GGACCTGCCT TTTGGTTCTA ACCAAGACCC TGCTCCTAAC ATAGATCCTG AGGAAAGATC ATGCTCATAT ATAAAATCTC
TAGTTGATGA GAGAGAGTAC TGAAAGGAAT GGTGTTAAGT AGCATTGTAT TGTGTCAATC CAGTGTCTCC AATGCGGGAT
GGTTGCTTGT GTTAGCTATG GCCAAAATGT GTTCGTCTTT TATCTTATGG CCCAGCTCTA TGTAGTAAAT AGTTGTATGG
CTTCGGAATT TTACCTTACT AATTTTTTAT TTCGTTAGTT TATTTTAATA TAATTGAGGA TTTTAAATGA AAAAGTTGAC
CACAAGAATC GAATAGATAA TTGACATGCT ATAAGCGTGA TAAATTTACG GCCACAATCA AATAGCTAAA GGCCGAAGTA
AAAGTCAGTA GTCCTCAAAA TTTTAAATCG CTCAGGTATA ATTCGATGGG GGTAGAAGAA TGGTAATCTT TCATCCCCAA
ATAAAAGATA GGATCATTAA TACAGACTCA AATTAAGCAC TACAAGTCTC CATGTCAAAT ATCTCCCAGC AATGTTGATA
TCAAAGTCGT GGTGGATATC CCATGTTTCC AAGCAGGATG GTTAATTGCA CCATTGAATC AAGCATAAGC AGACAGGATA
TTTTTCTTTA GAGTAAACTC GTCGGCCTTA GCAGGACTAA CAGACTGCAT CAATCAATAA AATAAAAGCG AGTTACACTT
TCAATTTTCA TCTCAACTAC GACCAAATTT AATTATTGCA AAACAATTAT TTCGAGATTA CAAGTTTTTT CTCAAGGAAG
TCTTTAA

>Vigan.08G256900.01
ATGGGTTCTG ATTCCAATTT GGGAGGGACA CCCTCAACAT CCTCGCCCAG TGCCAAGCGC ACCAGAGATC CTGAAGAGGA
AGTTTACCTC GACAATCTTC GCTCCCACAA ACGTTACCTA AGCGAGATAA TGGCATCCAG TCTCAATGGA TTGACAGTTG
GGGACTCGCT TCCTGATAAT CTCATGGAAT CTCCGGCAAG GTCTGAAAGC GTGTTCTCTT TCAGAGATGA TATATCTTTA
CAATATTCAC CTATGTCAGA AGATTCAGAT GACTTGAGGT TTTGTGAGAC TCCTGTGCAC AGTTGTTCGT CCCAGCCCGA
CAGTCTTCCC AGTAGTCCAG TTTCTTCTCC ACATAGGTAC CATAAGTCGC AGAATGTATT ATCTTCGGCA CCTTCCTCAA
GTTCAAATGC TTCTCATGGC TCAACCGTTT CCACTGCAAC TTGCCCCCAG CCTCGTCAGC GAGGGTCAGA TTCTGAAGGT
CGCTTCCCAT CATCTCCAAG TGATATATGC CACTCAGCTG ACTTGAGAAG AGCTGCACTT CTAAGATCTG TGCAGATGAG
AACACAACCA TCCTCTGCAT CTTTGGACCT GCCTTTTGGT TCTAACCAAG ACCCTGCTCC TAACATAGAT CCTGAGGAAA
GATCATGCTC ATATATAAAA TCTCTAGTTG ATGAGAGAGA GTACTGA

>Vigan.08G256900.01
MGSDSNLGGT PSTSSPSAKR TRDPEEEVYL DNLRSHKRYL SEIMASSLNG LTVGDSLPDN LMESPARSES VFSFRDDISL
QYSPMSEDSD DLRFCETPVH SCSSQPDSLP SSPVSSPHRY HKSQNVLSSA PSSSSNASHG STVSTATCPQ PRQRGSDSEG
RFPSSPSDIC HSADLRRAAL LRSVQMRTQP SSASLDLPFG SNQDPAPNID PEERSCSYIK SLVDEREY*