GBrowse Details

Vigan.08G257000.01

Basic Information:
Name: Vigan.08G257000.01
Multiple alignment
Variant Information
Position: Chr08:25981373..25986972 (- strand)
Length: 5600
Functional Information:
Description: Similar to Protein disulfide isomerase-like protein. [I7GEK3, Glycine max]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Cellular Component: endoplasmic reticulum (GO:0005783)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
Molecular Function: isomerase activity (GO:0016853)
InterPro: Thioredoxin (IPR005746)
Disulphide isomerase (IPR005788)
Endoplasmic reticulum, protein ERp29, C-terminal (IPR011679)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:60.32,70.24,69.50,33.22,96.38,134.35,94.21,58.26
Arabidopsis thaliana homolog: AT2G47470.1
Automatic updates:
Name: NM_001249360 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein disufide isomerase-like protein (LOC100037470), mRNA.
PubMed ID: 17181539 NCBI(pubmed)
Status: Known Variant
Name: NM_001249371 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein disulfide isomerase-like protein (LOC100037471), mRNA.
PubMed ID: 17181539 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:25981373..25982437 (- strand)
Length: 1065
Type: three_prime_UTR
Position: Chr08:25982438..25982503 (- strand)
Length: 66
Type: CDS
Position: Chr08:25982791..25982890 (- strand)
Length: 100
Type: CDS
Position: Chr08:25983141..25983265 (- strand)
Length: 125
Type: CDS
Position: Chr08:25983394..25983550 (- strand)
Length: 157
Type: CDS
Position: Chr08:25983928..25984019 (- strand)
Length: 92
Type: CDS
Position: Chr08:25984123..25984150 (- strand)
Length: 28
Type: CDS
Position: Chr08:25984302..25984419 (- strand)
Length: 118
Type: CDS
Position: Chr08:25984762..25984817 (- strand)
Length: 56
Type: CDS
Position: Chr08:25984950..25985047 (- strand)
Length: 98
Type: CDS
Position: Chr08:25985773..25985857 (- strand)
Length: 85
Type: CDS
Position: Chr08:25986478..25986644 (- strand)
Length: 167
Type: CDS
Position: Chr08:25986645..25986972 (- strand)
Length: 328
Type: five_prime_UTR


>Vigan.08G257000.01
ATATATACAT GTATTTGTAC GCGCGTAACG TGTCTTTTCC ACGTGGCTCA CATGTCTAGA TATTGACACC GTGTTCCTTT
GAAAGGTTGC CACGTCAACG ATAAGACGTC ACAGGTAAGA AAGTAGAATG ATGTGGTAGC GGCGTGGGAA ATGCAAAAGC
CAACGATGAA TTTGATTACA AGCGATGCAA TAAAACGGTG CCACGTGACA AATACGGTAG CGATACATTT AATGCTTCAA
ACGGTGTTTC GTATATAAGC CTGCACGTGC CGAAGCAGTT GAGCTGAAAT CGAGAAGAAA GAAAATAGCG AAGACCAGAA
AGAAGAAGAT GGAGAAGTAT CAGATCTGGA GCAGTAGGAT AGTGTTGGGA GCTTTCGCGT TTGCGCTACT GTTTCTAGCG
GCCTCAGCAG ACGACGTCGT TGTGCTCTCT GAAGAAAACT TCGAGAAGGA AGTTGGTCAG GACAGAGGAG CTCTCGTCGA
GTTCTATGCT CCCTGGTGTG GACATTGCAA AAAGCTAGCT CCAGAATATG AAAAGCTTGG AAGCAGCTTC AAGAAAGCCA
AATCTGTTTT AATTGGGAAG GTTGACTGTG ATGAGCACAA GAGTTTGTGC AGCAAATATG GAGTCTCTGG GTACCCAACA
CTTCAGTGGT TTCCAAAAGG ATCTCTTGAA CCCAAAAAGT ATGAAGGGCC ACGCACTGCT GAATCACTTG CTGAGTTTGT
AAATACAGAA GGAGGAACAA ATGTGAAGAT TGCTACAGCT CCTTCCAATG TAGTGGTCCT AACACCTGAA AATTTTAATG
AGATTGTGTT GGATGAAACC AAAGATGTCT TGGTTGAGTT TTATGCACCA TGGTGTGGGC ATTGCAAAAG TCTTGCTCCT
ACATACGAGA AAGTTGCCAC AGCATTTAAA TTGGAGGAAA ATGTAGTCAT TGCTAATCTG GATGCTGATA AATATAGGGA
TCTGGCTGAA AAGTTTGATG TGAGTGGATT TCCTACCTTG AAGTTCTTCC CAAAGAGCAA CAAAGCCGGT GAAGAGTACG
GAGGTGGAAG AGACTTGGAT GACTTTGTGG CTTTTATCAA TGAGAAATCT GGTTCAAGTC GAGATGGAAA AGGGCAACTT
ACTTCCCAAG CTGGTAGAGT AGAAAGTTTG GATGTCTTGG TGAAGGAGTT TGTCGCTGCC AGCGATGAAG AGAAGAAATC
CGTGTTTACC CGAATTGAAG AAGAAGTTGA GAAGCTTCAG GGTTCAGCCT CAAGTTACGG GAAGATTTAC TTGAAAGCTG
CCAAGAATTC CTTGGTAAAA GGTTCCGATT ATGCTAAAAA CGAAATCCAA CGCCTGCAGC GCATACTTGA CAAGTCTGTT
AGTCCTGCTA AGGCCGACGA GTTTACTCTA AAGAAAAATA TCCTGTCTGC TTATGCTTGA TTCAATGGTG CAATTAACCA
TCCTGCTTGG AAACATGGGA TATCCACCAC GACTTTGATA TCAACATTGC TGGGAGATAT TTGACATGGA GACTTGTAGT
GCTTAATTTG AGTCTGTATT AATGATCCTA TCTTTTATTT GGGGATGAAA GATTACCATT CTTCTACCCC CATCGAATTA
TACCTGAGCG ATTTAAAATT TTGAGGACTA CTGACTTTTA CTTCGGCCTT TAGCTATTTG ATTGTGGCCG TAAATTTATC
ACGCTTATAG CATGTCAATT ATCTATTCGA TTCTTGTGGT CAACTTTTTC ATTTAAAATC CTCAATTATA TTAAAATAAA
CTAACGAAAT AAAAAATTAG TAAGGTAAAA TTCCGAAGCC ATACAACTAT TTACTACATA GAGCTGGGCC ATAAGATAAA
AGACGAACAC ATTTTGGCCA TAGCTAACAC AAGCAACCAT CCCGCATTGG AGACACTGGA TTGACACAAT ACAATGCTAC
TTAACACCAT TCCTTTCAGT ACTCTCTCTC ATCAACTAGA GATTTTATAT ATGAGCATGA TCTTTCCTCA GGATCTATGT
TAGGAGCAGG GTCTTGGTTA GAACCAAAAG GCAGGTCCAA AGATGCAGAG GATGGTTGTG TTCTCATCTG CACAGATCTT
AGAAGTGCAG CTCTTCTCAA GTCAGCTGAG TGGCATATAT CACTTGGAGA TGATGGGAAG CGACCTTCAG AATCTGACCC
TCGCTGACGA GGCTGGGGGC AAGTTGCAGT GGAAACGGTT GAGCCATGAG AAGCATTTGA ACTTGAGGAA GGTGCCGAAG
ATAATACATT CTGCGACTTA TGGTACCTAT GTGGAGAAGA AACTGGACTA CTGGGAAGAC TGTCGGGCTG GGACGAACAA
CTGTGCACAG GAGTCTCACA AAACCTCAAG TCATCTGAAT CTTCTGACAT AGGTGAATAT TGTAAAGATA TATCATCTCT
GAAAATAAAT TCAACACAAT TAATTATTGT AAACGTTGCT AATCATTGGG TAATAAAACT AATTAATTTT AACAACAGAT
TGCCT

>Vigan.08G257000.01
ATGGAGAAGT ATCAGATCTG GAGCAGTAGG ATAGTGTTGG GAGCTTTCGC GTTTGCGCTA CTGTTTCTAG CGGCCTCAGC
AGACGACGTC GTTGTGCTCT CTGAAGAAAA CTTCGAGAAG GAAGTTGGTC AGGACAGAGG AGCTCTCGTC GAGTTCTATG
CTCCCTGGTG TGGACATTGC AAAAAGCTAG CTCCAGAATA TGAAAAGCTT GGAAGCAGCT TCAAGAAAGC CAAATCTGTT
TTAATTGGGA AGGTTGACTG TGATGAGCAC AAGAGTTTGT GCAGCAAATA TGGAGTCTCT GGGTACCCAA CACTTCAGTG
GTTTCCAAAA GGATCTCTTG AACCCAAAAA GTATGAAGGG CCACGCACTG CTGAATCACT TGCTGAGTTT GTAAATACAG
AAGGAGGAAC AAATGTGAAG ATTGCTACAG CTCCTTCCAA TGTAGTGGTC CTAACACCTG AAAATTTTAA TGAGATTGTG
TTGGATGAAA CCAAAGATGT CTTGGTTGAG TTTTATGCAC CATGGTGTGG GCATTGCAAA AGTCTTGCTC CTACATACGA
GAAAGTTGCC ACAGCATTTA AATTGGAGGA AAATGTAGTC ATTGCTAATC TGGATGCTGA TAAATATAGG GATCTGGCTG
AAAAGTTTGA TGTGAGTGGA TTTCCTACCT TGAAGTTCTT CCCAAAGAGC AACAAAGCCG GTGAAGAGTA CGGAGGTGGA
AGAGACTTGG ATGACTTTGT GGCTTTTATC AATGAGAAAT CTGGTTCAAG TCGAGATGGA AAAGGGCAAC TTACTTCCCA
AGCTGGTAGA GTAGAAAGTT TGGATGTCTT GGTGAAGGAG TTTGTCGCTG CCAGCGATGA AGAGAAGAAA TCCGTGTTTA
CCCGAATTGA AGAAGAAGTT GAGAAGCTTC AGGGTTCAGC CTCAAGTTAC GGGAAGATTT ACTTGAAAGC TGCCAAGAAT
TCCTTGGTAA AAGGTTCCGA TTATGCTAAA AACGAAATCC AACGCCTGCA GCGCATACTT GACAAGTCTG TTAGTCCTGC
TAAGGCCGAC GAGTTTACTC TAAAGAAAAA TATCCTGTCT GCTTATGCTT GA

>Vigan.08G257000.01
MEKYQIWSSR IVLGAFAFAL LFLAASADDV VVLSEENFEK EVGQDRGALV EFYAPWCGHC KKLAPEYEKL GSSFKKAKSV
LIGKVDCDEH KSLCSKYGVS GYPTLQWFPK GSLEPKKYEG PRTAESLAEF VNTEGGTNVK IATAPSNVVV LTPENFNEIV
LDETKDVLVE FYAPWCGHCK SLAPTYEKVA TAFKLEENVV IANLDADKYR DLAEKFDVSG FPTLKFFPKS NKAGEEYGGG
RDLDDFVAFI NEKSGSSRDG KGQLTSQAGR VESLDVLVKE FVAASDEEKK SVFTRIEEEV EKLQGSASSY GKIYLKAAKN
SLVKGSDYAK NEIQRLQRIL DKSVSPAKAD EFTLKKNILS AYA*