GBrowse Details

Vigan.08G259100.01

Basic Information:
Name: Vigan.08G259100.01
Multiple alignment
Variant Information
Position: Chr08:26276368..26280935 (- strand)
Length: 4568
Functional Information:
Description: Similar to Phenylalanine ammonia-lyase. [V7BET8, Phaseolus vulgaris]
GO: Biological Process: L-phenylalanine catabolic process (GO:0006559)
Biological Process: biosynthetic process (GO:0009058)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: ammonia-lyase activity (GO:0016841)
InterPro: Aromatic amino acid lyase (IPR001106)
Phenylalanine ammonia-lyase (IPR005922)
L-Aspartase-like (IPR008948)
Phenylalanine/histidine ammonia-lyases, active site (IPR022313)
Phenylalanine ammonia-lyase, shielding domain (IPR023144)
Fumarase/histidase, N-terminal (IPR024083)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.55,1.18,47.08,153.27,65.31,172.79,74.25,199.19
Arabidopsis thaliana homolog: AT2G37040.1, AT3G10340.1, AT3G53260.1, AT5G04230.2
Automatic updates:
Name: NM_001250027 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phenylalanine ammonia-lyase 2.1 (PAL2.1), mRNA.
PubMed ID: 30786857 NCBI(pubmed)
30113770 NCBI(pubmed)
28775360 NCBI(pubmed)
27411159 NCBI(pubmed)
24962214 NCBI(pubmed)
1840912 NCBI(pubmed)
6540068 NCBI(pubmed)
7197899 NCBI(pubmed)
7197898 NCBI(pubmed)
567042 NCBI(pubmed)
Status: Known Variant
Name: NM_001357054 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phenylalanine ammonia-lyase 2.3 (PAL2.3), mRNA.
PubMed ID: 28775360 NCBI(pubmed)
27411159 NCBI(pubmed)
25124843 NCBI(pubmed)
24962214 NCBI(pubmed)
1840912 NCBI(pubmed)
6540068 NCBI(pubmed)
7197899 NCBI(pubmed)
7197898 NCBI(pubmed)
567042 NCBI(pubmed)
24504715 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:26276368..26276598 (- strand)
Length: 231
Type: three_prime_UTR
Position: Chr08:26276599..26278348 (- strand)
Length: 1750
Type: CDS
Position: Chr08:26280206..26280597 (- strand)
Length: 392
Type: CDS
Position: Chr08:26280598..26280935 (- strand)
Length: 338
Type: five_prime_UTR


>Vigan.08G259100.01
CTCAAGGGTG ACATCGCACC CAGAGAAGGG GAAAGAAATT GCCACGTAGC GGAAGGAGAG CCGCTGATCT AGGCTGGTAA
TCGAACGCTT GTAATTATTT CTCCACCAAC CCCCTTCACT AGCCCTTGTG CATCGTTACC ACCCTTTATA CCCACCTACC
AGACACCAAC GCTCCAGATT CGCTACGGCC TTAACACTCT CTGTTATATA TAACCCCTTT CACGAACCAA ACTAATCATT
CACCACATTA CGCTTACGAG CTCCTTCTCC TCTCTCCGTC TCAGTCTCCT CATTCCTTTA TTTAAAGCCG CTTCCTCCAC
TCACCTACCC AAACGCAAAT GGACGCAACA CTCCCCAATG GTAAAGACGC TTTCTGCGTC ACCGCCGCCA ATGCCGCGGG
GGACCCGCTC AACTGGGCCG CCGCGGCCGA CGCGCTCTCG GGTAGCCATC TCGACGAGGT CAAGCGCATG GTCGCCGACT
ACCGCAAGCC CGCCGTCCGC CTCGGCGGCG AGACGCTCAC CGTCGCTCAG GTGGCGGCGA TTGCGGCGCA CGACCAGGGT
CTCAAGGTGG AGCTGGCGGA GGCTGCCAGG GCCGGCGTCA AGGCCAGCAG TGACTGGGTC ATGGACAGCA TGGACAAGGG
TACCGACAGT TACGGTGTCA CCACCGGCTT CGGTGCCACC TCCCACCGCC GTACCAAACA AGGTGGTGCC TTGCAGAAGG
AGCTTATCAG GTTTTTGAAT GCTGGGATAT TTGGCAATGG TACAGAGGCG AATTGCACCC TACCCCACAC TGCAACTAGA
GCAGCTATGC TTGTGAGAGT GAACACTCTT CTCCAAGGGT ACTCTGGAAT CAGATTTGAA ATTTTGGAGG CCATCACCAA
TCTTTTGAAC AACAACGTTA CTCCATGTTT GCCACTTAGG GGAACAATCA CAGCATCTGG TGATCTTGTA CCTTTGTCGT
ACATTGCCGG TTTGTTAACC GGCAGACCAA ACTCGAAGGC TGTGGGTCCC TCTGGGGAGA TTCTGAATGC CAAGGAAGCC
TTTGAATTGG CCAACATTGG TTCTGAGTTC TTTGAGTTGC AACCTAAGGA AGGGCTTGCC CTTGTGAATG GTACGGCTGT
TGGCTCTGGC TTGGCCTCCA TAGTTCTCTT TGAAGCGAAC ATTCTGGCTG TCTTGTCGGA AGTTATTTCA GCAGTTTTTG
CTGAAGTTAT GCAAGGAAAG CCCGAGTTCA CTGATCATTT GACTCACAAG CTAAAGCACC ATCCTGGCCA GATTGAGGCT
GCAGCTATCA TGGAACACAT TTTGGATGGA AGCTCTTACA TCAAAGCTGC TAAGAAGTTG CATGAGATTG ATCCTTTGCA
GAAACCTAAA CAAGACCGCT ATGCCCTTAG GACTTCACCC CAATGGCTTG GTCCTCAAAT CGAAGTGATC AGGTTTTCTA
CCAAGTCCAT TGAGAGGGAG ATAAATTCAG TCAACGACAA CCCTTTGATT GATGTGTCAA GGAACAAGGC CTTGCATGGT
GGTAACTTCC AAGGAACTCC AATTGGAGTC TCCATGGATA ACACCCGTTT GGCTCTTGCT TCCATTGGCA AACTCATGTT
TGCTCAATTC TCTGAGCTTG TCAATGACTA TTACAATAAT GGGTTGCCTT CAAATCTCAC TGCCAGCAGA AACCCCAGCT
TGGATTATGG TTTCAAGGGA GCTGAAATTG CCATGGCATC TTACTGCTCT GAACTCCAAT ATTTGGCTAA CCCTGTGACC
AGCCATGTCC AAAGCGCGGA GCAACACAAC CAAGATGTGA ACTCTTTGGG ATTGATTTCG TCTAGGAAGA CCAATGAGGC
TGTTGAGATC CTCAAGCTAA TGTCTTCAAC TTTCCTCGTT GCACTTTGCC AGGCCATTGA CTTGAGGCAT TTGGAGGAGA
ATTTGAAGAA CACTGTGAAG AATGTCGTGA GCCAAGTTGC CAAGAGGACT CTCACCACAG GTGTCAATGG AGAACTTCAT
CCTTCAAGAT TTTGTGAGAA AGACTTGTTG AAAGTTGTTG ATAGAGAATA CACATATGCC TACATTGACG ATCCCTGCAG
TGGCACATAC CCTTTGATGC AAAAACTAAG GCAAGTTCTT GTGGAATATG CATTGGCTAA TGGAGAAAAC GAGAAAAACT
TGAACACGTC GATCTTCCAA AAGATTGCGT CCTTTGAGGA GGAGTTGAAA GCCCTCTTGC CTAAGGAAGT GGAAGGTGCA
AGACTTGCAT ATGAGAATGA CCAATGTGCA GTTCCCAACA AGATCAAGGA ATGTAGGTCT TACCCCTTGT ACAAGTTTGT
GAGAGAGGAG TTAGGGACAT CGTTGCTGAC TGGTGAAAAG GTCATCTCAC CCGGTGAAGA GTGTGACAAG GTGTTCACTG
CTATGTGCCA AGGGAAAATC ATTGATCCTC TTTTGGAATG CCTTGGAGAG TGGAATGGTG CTCCGCTTCC AATTTCTTAG
TTAATCATTT TCTGTATCAT GAAGAGTGGT TTCTTTCTAT ATACGTATTT GTGTTCATAA GAATTTGGTT TGTCTATAAG
CCTGTGGCAA ATCAATCCAC ATACAACTTT CAGGCTTCTT GATGCCAAGG AACTTGTAAT TCATATTGTA ATAGAATTCC
ATTTGTTTGC CGTAGCGTTG AGTGCAAATA TTAATACATG GCCTTTCATG TTAAGAATGT TTTCTCTATA A

>Vigan.08G259100.01
ATGGACGCAA CACTCCCCAA TGGTAAAGAC GCTTTCTGCG TCACCGCCGC CAATGCCGCG GGGGACCCGC TCAACTGGGC
CGCCGCGGCC GACGCGCTCT CGGGTAGCCA TCTCGACGAG GTCAAGCGCA TGGTCGCCGA CTACCGCAAG CCCGCCGTCC
GCCTCGGCGG CGAGACGCTC ACCGTCGCTC AGGTGGCGGC GATTGCGGCG CACGACCAGG GTCTCAAGGT GGAGCTGGCG
GAGGCTGCCA GGGCCGGCGT CAAGGCCAGC AGTGACTGGG TCATGGACAG CATGGACAAG GGTACCGACA GTTACGGTGT
CACCACCGGC TTCGGTGCCA CCTCCCACCG CCGTACCAAA CAAGGTGGTG CCTTGCAGAA GGAGCTTATC AGGTTTTTGA
ATGCTGGGAT ATTTGGCAAT GGTACAGAGG CGAATTGCAC CCTACCCCAC ACTGCAACTA GAGCAGCTAT GCTTGTGAGA
GTGAACACTC TTCTCCAAGG GTACTCTGGA ATCAGATTTG AAATTTTGGA GGCCATCACC AATCTTTTGA ACAACAACGT
TACTCCATGT TTGCCACTTA GGGGAACAAT CACAGCATCT GGTGATCTTG TACCTTTGTC GTACATTGCC GGTTTGTTAA
CCGGCAGACC AAACTCGAAG GCTGTGGGTC CCTCTGGGGA GATTCTGAAT GCCAAGGAAG CCTTTGAATT GGCCAACATT
GGTTCTGAGT TCTTTGAGTT GCAACCTAAG GAAGGGCTTG CCCTTGTGAA TGGTACGGCT GTTGGCTCTG GCTTGGCCTC
CATAGTTCTC TTTGAAGCGA ACATTCTGGC TGTCTTGTCG GAAGTTATTT CAGCAGTTTT TGCTGAAGTT ATGCAAGGAA
AGCCCGAGTT CACTGATCAT TTGACTCACA AGCTAAAGCA CCATCCTGGC CAGATTGAGG CTGCAGCTAT CATGGAACAC
ATTTTGGATG GAAGCTCTTA CATCAAAGCT GCTAAGAAGT TGCATGAGAT TGATCCTTTG CAGAAACCTA AACAAGACCG
CTATGCCCTT AGGACTTCAC CCCAATGGCT TGGTCCTCAA ATCGAAGTGA TCAGGTTTTC TACCAAGTCC ATTGAGAGGG
AGATAAATTC AGTCAACGAC AACCCTTTGA TTGATGTGTC AAGGAACAAG GCCTTGCATG GTGGTAACTT CCAAGGAACT
CCAATTGGAG TCTCCATGGA TAACACCCGT TTGGCTCTTG CTTCCATTGG CAAACTCATG TTTGCTCAAT TCTCTGAGCT
TGTCAATGAC TATTACAATA ATGGGTTGCC TTCAAATCTC ACTGCCAGCA GAAACCCCAG CTTGGATTAT GGTTTCAAGG
GAGCTGAAAT TGCCATGGCA TCTTACTGCT CTGAACTCCA ATATTTGGCT AACCCTGTGA CCAGCCATGT CCAAAGCGCG
GAGCAACACA ACCAAGATGT GAACTCTTTG GGATTGATTT CGTCTAGGAA GACCAATGAG GCTGTTGAGA TCCTCAAGCT
AATGTCTTCA ACTTTCCTCG TTGCACTTTG CCAGGCCATT GACTTGAGGC ATTTGGAGGA GAATTTGAAG AACACTGTGA
AGAATGTCGT GAGCCAAGTT GCCAAGAGGA CTCTCACCAC AGGTGTCAAT GGAGAACTTC ATCCTTCAAG ATTTTGTGAG
AAAGACTTGT TGAAAGTTGT TGATAGAGAA TACACATATG CCTACATTGA CGATCCCTGC AGTGGCACAT ACCCTTTGAT
GCAAAAACTA AGGCAAGTTC TTGTGGAATA TGCATTGGCT AATGGAGAAA ACGAGAAAAA CTTGAACACG TCGATCTTCC
AAAAGATTGC GTCCTTTGAG GAGGAGTTGA AAGCCCTCTT GCCTAAGGAA GTGGAAGGTG CAAGACTTGC ATATGAGAAT
GACCAATGTG CAGTTCCCAA CAAGATCAAG GAATGTAGGT CTTACCCCTT GTACAAGTTT GTGAGAGAGG AGTTAGGGAC
ATCGTTGCTG ACTGGTGAAA AGGTCATCTC ACCCGGTGAA GAGTGTGACA AGGTGTTCAC TGCTATGTGC CAAGGGAAAA
TCATTGATCC TCTTTTGGAA TGCCTTGGAG AGTGGAATGG TGCTCCGCTT CCAATTTCTT AG

>Vigan.08G259100.01
MDATLPNGKD AFCVTAANAA GDPLNWAAAA DALSGSHLDE VKRMVADYRK PAVRLGGETL TVAQVAAIAA HDQGLKVELA
EAARAGVKAS SDWVMDSMDK GTDSYGVTTG FGATSHRRTK QGGALQKELI RFLNAGIFGN GTEANCTLPH TATRAAMLVR
VNTLLQGYSG IRFEILEAIT NLLNNNVTPC LPLRGTITAS GDLVPLSYIA GLLTGRPNSK AVGPSGEILN AKEAFELANI
GSEFFELQPK EGLALVNGTA VGSGLASIVL FEANILAVLS EVISAVFAEV MQGKPEFTDH LTHKLKHHPG QIEAAAIMEH
ILDGSSYIKA AKKLHEIDPL QKPKQDRYAL RTSPQWLGPQ IEVIRFSTKS IEREINSVND NPLIDVSRNK ALHGGNFQGT
PIGVSMDNTR LALASIGKLM FAQFSELVND YYNNGLPSNL TASRNPSLDY GFKGAEIAMA SYCSELQYLA NPVTSHVQSA
EQHNQDVNSL GLISSRKTNE AVEILKLMSS TFLVALCQAI DLRHLEENLK NTVKNVVSQV AKRTLTTGVN GELHPSRFCE
KDLLKVVDRE YTYAYIDDPC SGTYPLMQKL RQVLVEYALA NGENEKNLNT SIFQKIASFE EELKALLPKE VEGARLAYEN
DQCAVPNKIK ECRSYPLYKF VREELGTSLL TGEKVISPGE ECDKVFTAMC QGKIIDPLLE CLGEWNGAPL PIS*