GBrowse Details

Vigan.08G261900.01

Basic Information:
Name: Vigan.08G261900.01
Multiple alignment
Variant Information
Position: Chr08:26959939..26960673 (+ strand)
Length: 735
Functional Information:
Description: Similar to Casparian strip membrane protein 2. [P0DI40, Vigna unguiculata]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant subgroup (IPR006459)
Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.00,0.00,0.07,0.00,0.15,0.00
Arabidopsis thaliana homolog: AT2G36100.1
Automatic updates:
Name: NM_001250330 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max casparian strip membrane protein 4 (LOC100500387), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255488 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max casparian strip membrane protein 2 (CASP2), mRNA.
PubMed ID: 24920445 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:26959939..26960177 (+ strand)
Length: 239
Type: CDS
Position: Chr08:26960252..26960375 (+ strand)
Length: 124
Type: CDS
Position: Chr08:26960452..26960673 (+ strand)
Length: 222
Type: CDS


>Vigan.08G261900.01
ATGTCAACGA CCGTGGATGT CCCAGAATCC AGCAATGTTG GTAAAGGAAA AGCAGTTGCA GTTGGAAGGC CAGGAGGGTG
GAAGAAAGGG TTAGCCATAA TGGACTTCAT TCTAAGGTTG GGTGGCATAG CATCTTCTCT TGGTGCTGCA GCAACTATGG
GAACAAGTGA TCAAACGCTC CCTTTCTTCA CTCAGTTCTT TCAGTTTGAA GCTAGTTACG ATAGCTTCAC TACTTTTCAG
TTTTTTGTGA TTACAATGTC ACTGGTGGCT GGGTATCTTG TCCTGTCACT ACCCTTCTCA GTCGTAGCCA TCATACGCCC
TCATGCAGCT GGACCAAGGC TTTTCCTCAT CATCCTAGAC ACAGTGTTTC TGACTTTGGC CACAGCTAGT GGTGCTTCGG
CAGCTGCAAT CGTTTACTTG GCACACAACG GCAATCAAGA CTCCAACTGG CTTGCCATCT GTAACCAGTT TGGAGACTTT
TGTGCCCAAA CCAGTGGAGC TGTGGTTGCG TCCTTCGTCG CTGTGGTTAT CCTTGTGCTT CTCGTTATTA TGTCTGCTTT
GCTCCTCAAA AGACACCAAA GTTAA

>Vigan.08G261900.01
ATGTCAACGA CCGTGGATGT CCCAGAATCC AGCAATGTTG GTAAAGGAAA AGCAGTTGCA GTTGGAAGGC CAGGAGGGTG
GAAGAAAGGG TTAGCCATAA TGGACTTCAT TCTAAGGTTG GGTGGCATAG CATCTTCTCT TGGTGCTGCA GCAACTATGG
GAACAAGTGA TCAAACGCTC CCTTTCTTCA CTCAGTTCTT TCAGTTTGAA GCTAGTTACG ATAGCTTCAC TACTTTTCAG
TTTTTTGTGA TTACAATGTC ACTGGTGGCT GGGTATCTTG TCCTGTCACT ACCCTTCTCA GTCGTAGCCA TCATACGCCC
TCATGCAGCT GGACCAAGGC TTTTCCTCAT CATCCTAGAC ACAGTGTTTC TGACTTTGGC CACAGCTAGT GGTGCTTCGG
CAGCTGCAAT CGTTTACTTG GCACACAACG GCAATCAAGA CTCCAACTGG CTTGCCATCT GTAACCAGTT TGGAGACTTT
TGTGCCCAAA CCAGTGGAGC TGTGGTTGCG TCCTTCGTCG CTGTGGTTAT CCTTGTGCTT CTCGTTATTA TGTCTGCTTT
GCTCCTCAAA AGACACCAAA GTTAA

>Vigan.08G261900.01
MSTTVDVPES SNVGKGKAVA VGRPGGWKKG LAIMDFILRL GGIASSLGAA ATMGTSDQTL PFFTQFFQFE ASYDSFTTFQ
FFVITMSLVA GYLVLSLPFS VVAIIRPHAA GPRLFLIILD TVFLTLATAS GASAAAIVYL AHNGNQDSNW LAICNQFGDF
CAQTSGAVVA SFVAVVILVL LVIMSALLLK RHQS*