GBrowse Details

Vigan.08G263900.01

Basic Information:
Name: Vigan.08G263900.01
Multiple alignment
Variant Information
Position: Chr08:27521047..27526356 (+ strand)
Length: 5310
Functional Information:
Description: Similar to zinc finger CCCH domain-containing protein 21-like. [XP_004497453.1, Cicer arietinum]
GO: Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, CCCH-type (IPR000571)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:115.21,69.62,53.44,48.10,61.09,35.65,32.76,49.49
Arabidopsis thaliana homolog: AT2G20280.1
Automatic updates:
Name: KM587704 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone GmC3H30 C3H zinc finger protein mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001317657 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc finger CCCH domain-containing protein 11-like (LOC100778701), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:27521047..27521313 (+ strand)
Length: 267
Type: five_prime_UTR
Position: Chr08:27521314..27521484 (+ strand)
Length: 171
Type: CDS
Position: Chr08:27521589..27521673 (+ strand)
Length: 85
Type: CDS
Position: Chr08:27521764..27521904 (+ strand)
Length: 141
Type: CDS
Position: Chr08:27522012..27522100 (+ strand)
Length: 89
Type: CDS
Position: Chr08:27522299..27522487 (+ strand)
Length: 189
Type: CDS
Position: Chr08:27522566..27522696 (+ strand)
Length: 131
Type: CDS
Position: Chr08:27522837..27522939 (+ strand)
Length: 103
Type: CDS
Position: Chr08:27525733..27525906 (+ strand)
Length: 174
Type: CDS
Position: Chr08:27525907..27526356 (+ strand)
Length: 450
Type: three_prime_UTR


>Vigan.08G263900.01
TTTAAGATTA ACCTATCAAG TGTGCACTGG AGGGGTAGAT CGGGAATTGA ACCCCTTCAT AATGTTCTGG AACCTACACC
ACCCCTTGCC TCTCACCTTC GAACCCTAAC CCACCCAAAC AAAAAGCAAA CTTCTTTCCC CTCTCAACAT CCCCTCCTTT
GCACCACACA GATCCTTCCT TCGTTCATAC CTTTATTAAT TTTCATCGAA GCAATTAATA TTATCTAACA CATATATTTG
TTCTTAATTT TTTGATGCCG ATAAAATATG CCGCCGAAGC AGCAATCCAA AGCTGATTTA GCGAAGAAGC AGAAGATTGT
AGAGGACAAA ACCTTCGGTC TCAAGAACAA AAACAAGAGC AAAAATGTTC AGAAGTATGT CCAGAACCTT AAGCAATCAG
TGCAGCCCAG GGTCGATCCT GCCAAAGTCG ATGCCAAGAA AAAGAAGGAG GAAGAGAAGG CCAAGGAGAA GGAGCTAAAT
GATTTGTTCA AAATCGCTGT TACTCAGCCT AAAGTGCCAG TTGGCGTTGA TCCCAAGTCT ATAGTGTGTG AGTTTTATAA
AGTCGGGCAA TGCGCCAAAG GCTTCAAGTG CAAGTTTTCG CATGATTTGA ATGTTCAGAG GAAAGGGGAA AAAATTGACA
TTTATAGTGA TAAGCGTGAC CAGGAAACAA TGGAGGACTG GGATCAAGAG ACCTTGGAGA AGGCGGTGGA GTCGAATAAA
TCTTATTATA ATCAGAATAA AGCGACTGAC ATTGTATGCA AATACTTTTT GGATGCTGTA GAAAAGAAGC AATACGGGTG
GTTATGGGAA TGCCCCAATG GTGGTAAGAA TTGCCATTAT AGACATGCTC TTCCACCTGG TTATGTTTTG AAATCCCAAA
TGAAGGCTTT GTTAGAGGAA GAAGCTGACA AATTATCAAT CGAGGAGGAG ATTGAAAATC AGCGTGCCAA AGTGAAAACC
ACGACTCCTA TGACTCCTGA CTTATTCTAT GAATGGAAGA AGAAGAAGAT AGAAGAAAGA GATGCCAATT TAGCCGCACA
GCAGGCAGAG AGGGCTAAGA ATGACCGTAT GAGTGGTCGG GAGCTGTTTC TGTCAAATGC TAGCTTGTTT GTGGACGATG
CAGAAGCATA TGAAAAATAC CAGAGAGAAC CAGAATATGA TGAAACTGGA CAGAATGGTA ATGGGAACGC TACCCAAGAT
GGTCCTAGCA CCTCAGCCGG TGCTGATGGT GAAGCTCTTG ATGACATAGA TGATGATGAC GATGAGTTGG ACTTGGATGA
GTTAAATGAA TTGGAAGCAA GTTTAGCCAA GACATCAATC CAAATAAAGG AAACGGGAGC TGAAGCTTAA TCCTGAGAAT
CAAACAATCT TCACGTCACA TTTTTGTGCC TCTGCTGAAA AATTGAGCAT TTACCTTTAC CCACTCGCTC TGTATGCTTT
CACGGAAGGT TTTTGAATGA AGGTTGTGCT GATAATGAAA TTACTATCTG CAGTATCGCA TTTGATATGA ATAATGGCAG
TTTCATAAAA TCCAGTTTTC TGTTTTATTA CATCTCGTAT TGGACCTCCG ACATTTTTTG TTGTTTGAGA CGAATAGACT
TGTGTATGTA GACTGTAACT GATTTGTACA TGAGTTTCCT GTGTCGAAAA GGGATCTTCA ATTGTTCTCG TGCATGTGAT
TTTCTTGAAC CCATCAAAGC ATAAAATGCT ACTTTTTTTA TGGATGTTAT TGCTAGATAC TTTAGGTTAG TTATGCTTGA
GTTTTTGAAC GGGAGTTTAG TTTTCTTACC TTGTTTTTGG 

>Vigan.08G263900.01
ATGCCGCCGA AGCAGCAATC CAAAGCTGAT TTAGCGAAGA AGCAGAAGAT TGTAGAGGAC AAAACCTTCG GTCTCAAGAA
CAAAAACAAG AGCAAAAATG TTCAGAAGTA TGTCCAGAAC CTTAAGCAAT CAGTGCAGCC CAGGGTCGAT CCTGCCAAAG
TCGATGCCAA GAAAAAGAAG GAGGAAGAGA AGGCCAAGGA GAAGGAGCTA AATGATTTGT TCAAAATCGC TGTTACTCAG
CCTAAAGTGC CAGTTGGCGT TGATCCCAAG TCTATAGTGT GTGAGTTTTA TAAAGTCGGG CAATGCGCCA AAGGCTTCAA
GTGCAAGTTT TCGCATGATT TGAATGTTCA GAGGAAAGGG GAAAAAATTG ACATTTATAG TGATAAGCGT GACCAGGAAA
CAATGGAGGA CTGGGATCAA GAGACCTTGG AGAAGGCGGT GGAGTCGAAT AAATCTTATT ATAATCAGAA TAAAGCGACT
GACATTGTAT GCAAATACTT TTTGGATGCT GTAGAAAAGA AGCAATACGG GTGGTTATGG GAATGCCCCA ATGGTGGTAA
GAATTGCCAT TATAGACATG CTCTTCCACC TGGTTATGTT TTGAAATCCC AAATGAAGGC TTTGTTAGAG GAAGAAGCTG
ACAAATTATC AATCGAGGAG GAGATTGAAA ATCAGCGTGC CAAAGTGAAA ACCACGACTC CTATGACTCC TGACTTATTC
TATGAATGGA AGAAGAAGAA GATAGAAGAA AGAGATGCCA ATTTAGCCGC ACAGCAGGCA GAGAGGGCTA AGAATGACCG
TATGAGTGGT CGGGAGCTGT TTCTGTCAAA TGCTAGCTTG TTTGTGGACG ATGCAGAAGC ATATGAAAAA TACCAGAGAG
AACCAGAATA TGATGAAACT GGACAGAATG GTAATGGGAA CGCTACCCAA GATGGTCCTA GCACCTCAGC CGGTGCTGAT
GGTGAAGCTC TTGATGACAT AGATGATGAT GACGATGAGT TGGACTTGGA TGAGTTAAAT GAATTGGAAG CAAGTTTAGC
CAAGACATCA ATCCAAATAA AGGAAACGGG AGCTGAAGCT TAA

>Vigan.08G263900.01
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQN LKQSVQPRVD PAKVDAKKKK EEEKAKEKEL NDLFKIAVTQ
PKVPVGVDPK SIVCEFYKVG QCAKGFKCKF SHDLNVQRKG EKIDIYSDKR DQETMEDWDQ ETLEKAVESN KSYYNQNKAT
DIVCKYFLDA VEKKQYGWLW ECPNGGKNCH YRHALPPGYV LKSQMKALLE EEADKLSIEE EIENQRAKVK TTTPMTPDLF
YEWKKKKIEE RDANLAAQQA ERAKNDRMSG RELFLSNASL FVDDAEAYEK YQREPEYDET GQNGNGNATQ DGPSTSAGAD
GEALDDIDDD DDELDLDELN ELEASLAKTS IQIKETGAEA *