GBrowse Details

Vigan.08G277600.01

Basic Information:
Name: Vigan.08G277600.01
Multiple alignment
Variant Information
Position: Chr08:32392710..32397379 (+ strand)
Length: 4670
Functional Information:
Description: Similar to V-type proton ATPase subunit G1-like isoform X2. [XP_004497500.1, Cicer arietinum]
GO: Biological Process: proton transport (GO:0015992)
Cellular Component: vacuolar proton-transporting V-type ATPase complex (GO:0016471)
Molecular Function: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances (GO:0016820)
InterPro: Vacuolar (H+)-ATPase G subunit (IPR005124)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:26.97,16.92,46.83,48.12,47.82,58.10,54.65,55.09
Arabidopsis thaliana homolog: AT3G01390.1
Automatic updates:
Name: NM_001249319 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499803 (LOC100499803), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249669 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306550 (LOC100306550), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:32392710..32393640 (+ strand)
Length: 931
Type: five_prime_UTR
Position: Chr08:32393641..32393803 (+ strand)
Length: 163
Type: CDS
Position: Chr08:32396634..32396734 (+ strand)
Length: 101
Type: CDS
Position: Chr08:32396822..32396965 (+ strand)
Length: 144
Type: CDS
Position: Chr08:32396966..32397379 (+ strand)
Length: 414
Type: three_prime_UTR


>Vigan.08G277600.01
AAACACCTTT CAGTCACAGG TACGCTCCTC TCTTCTTCCC TTTCAGATCT ACGCGATTCT ATTGCTTCCC CTCTCCAATT
CCACGCCGTT TCTTGTGCCT CTTTTCTCTT TCTTCTCTCT TCGTTATGCA TAAATATAAA TTAAATACAA ACGCTGAACT
GCACCTTAAC TAGATTTGGA TCTTTGCTTC TTAAATTATT GTATCAACGG AATTTCTGGT TAGCTTTTCT AGGTTTTTGA
TCTAAAACGA ACTAATAATA ATAATAACGA TTTGGAGAAG TTTTTCAGGG GAAGTGACTA ATCTTACTGA CTAAATAAGA
AAATTAATGC TTAATGAATT GATATTCCAA CACATCTATG CCTGTATGTG TTTTCACGTT CGTGGTACTT AGTTACACTT
GAAAGTGAAA TTTTCACTTC AGAGAAGTTA GATCCAAATT ATACCGTGTA AAATTTGTGA TTCTGTAATT GGATGATCCT
GTTTGCCGTT AATTTCATTT TTAAGTTCAC TGCCCCGTAT TTGGTTGCAT TTTTTTTGCA AGATCGTGAA TCGCGCCCGA
ATCTTTACCT CAACTACAGT TTAAAATTGA ATCATGTGAA ACTGCAATTT AAAATACTTT ACACATTAAA AACCTAATTT
TAATGGTTGC AGACGTAGTT TGAAGGTGTT TTTGTCTTTG CAAATCAAGC TAATTACGGT CTATGTATTG CTGCATGCTT
CCTTCTGTAT GATGTTGCTA TAATTAATTC GTCTAATGAT TTTTCTCGCC CTTTGTTTGG AAGGAGAAGA GTATTTGTTT
GGTTTTGTAA CATCTTTAGT TCAAAATTTC AAGTTTGATG ATAGAATCAG TTGTGTCTTG TTACTGTTGC ACTCCTTTCA
CTTTTCCGAA TTCCTAGGTA GAATGAAGGC GGTTCTTTTG CCTAATTATT GATGTGTTGT CGGAGGAGTT GCTTCGTGTT
AACCAATTCA CCATTTGTAA ATAGTTTCTG TCTGTGTCAT GACAGAATGG CATCCAACAG GGGTCAAGGT GGAATTCAAC
AGTTGTTGGC TGCAGAACAA GAGGCCCAAC GGATTGTGAA TGCTGCAAAA GCTGAAAAAC TGGCCAGGTT GAAACAAGCC
AAAGAAGAGG CTGACAAAGA GATTGCAGAG TACCGAGCTC AACTGGAGCG TGAGTTTCAA AAGAAAGTTT CAGACAGTAC
TGGTGATTCT GGAGCTAATG TCAAGCGGCT TGAGCAAGAA ACTGAAGCAA AAATTCAGAA CCTGAAAACG GAGGCTGCAA
AAATTTCGGA TGATGTTGTC GCCATGCTTC GTACGTATGT TACAAGTGTG AAAAATTAGG ACCCTTTGAT ATACATTGGT
GCCGAGGACC CCTAAATTAT GATTATTATT ATGCTGAGTT TATTCTTTAC TCTAGATATT GTGGTGAGGA TAAGATTCTT
GTTTTGGTTA TAATGCTTAG TACCTTGCTG CGCTGTGTTC AAAGAAATAA CTTGAAATTT GTTAAAATAA ACAGTTCAGG
ATTAAAAGAC GTGTATATTT TTGTGTTGCC GTTTTAACGA GTGCATGAGG ACCAATTCCT CCCCTGTTTA TAAATGTCGA
GTCAAATTGT ATGGCAAAAT TCCAATATTC AAATGCAGTA CAAGCCATAC AGTGGCACGT CTATCAAAGG TACATTAATG
GGTAAGAGGA TGCTTGTTTA TAGTTTTGTG ACTTTTTGTT GTCAATGACA GTCCTACTGC CGAATTTAAG CTA

>Vigan.08G277600.01
ATGTGTTGTC GGAGGAGTTG CTTCGTGTTA ACCAATTCAC CATTTGTAAA TAGTTTCTGT CTGTGTCATG ACAGAATGGC
ATCCAACAGG GGTCAAGGTG GAATTCAACA GTTGTTGGCT GCAGAACAAG AGGCCCAACG GATTGTGAAT GCTGCAAAAG
CTGAAAAACT GGCCAGGTTG AAACAAGCCA AAGAAGAGGC TGACAAAGAG ATTGCAGAGT ACCGAGCTCA ACTGGAGCGT
GAGTTTCAAA AGAAAGTTTC AGACAGTACT GGTGATTCTG GAGCTAATGT CAAGCGGCTT GAGCAAGAAA CTGAAGCAAA
AATTCAGAAC CTGAAAACGG AGGCTGCAAA AATTTCGGAT GATGTTGTCG CCATGCTTCG TACGTATGTT ACAAGTGTGA
AAAATTAG

>Vigan.08G277600.01
MCCRRSCFVL TNSPFVNSFC LCHDRMASNR GQGGIQQLLA AEQEAQRIVN AAKAEKLARL KQAKEEADKE IAEYRAQLER
EFQKKVSDST GDSGANVKRL EQETEAKIQN LKTEAAKISD DVVAMLRTYV TSVKN*