GBrowse Details

Vigan.08G290700.01

Basic Information:
Name: Vigan.08G290700.01
Multiple alignment
Variant Information
Position: Chr08:35568399..35571108 (+ strand)
Length: 2710
Functional Information:
Description: Similar to Uncharacterized protein. [I1LZC4, Glycine max]
InterPro: DnaJ homologue, subfamily C, member 28, conserved domain (IPR018961)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:116.12,50.04,7.70,18.66,8.00,12.54,9.62,8.02
Automatic updates:
Name: NM_001249625 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305523 (LOC100305523), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:35568399..35568478 (+ strand)
Length: 80
Type: five_prime_UTR
Position: Chr08:35568479..35568711 (+ strand)
Length: 233
Type: CDS
Position: Chr08:35570072..35570402 (+ strand)
Length: 331
Type: CDS
Position: Chr08:35570527..35570616 (+ strand)
Length: 90
Type: CDS
Position: Chr08:35570617..35571108 (+ strand)
Length: 492
Type: three_prime_UTR


>Vigan.08G290700.01
GAACAGCAGT GACAGGAAGT TATTGCAGAA GGAGAAAGGG TGAGAGGCAG AAATCGAGGG CGGTGTTTGA GAGACTAAGC
ATGGCAACGT GTCTTCGCCT CAGGGGATTT ACAACTATCA ATTCGCGCGC TCTCTTCGTT TCCACCACTA GATTCTCCTC
CTCCTCTTCT TCCTCTTCCT CTTCGTCGTC GTCATCGTCT TCCGGTAAGT CTAAAACGGG GAAGAAGTTC ATGGATCGTC
TTACGGCCGT TATCGACGCC GTTCATGATC GTAAACTACC GCCGGAGCTA CGCGGCCAGC GCAACAATGT CAGGTCAGAA
ACTGATATTA TTAACGTTGT TGAGCAAAGG ATATGGCATT CCATGGAAGA GGGCCAGTTT GAGAACTTGC CAGGCAAAGG
CAAGCCTCTT AAGCTTGACA CAAATCCTCA TGCAGATCCA GCTGAAGACA CCCTGTACCG AATCTTGTCA AAAAATGGTT
GTGCACCAGA GTGGGTCGAG CTTAACAAAG AAATAAGATC TAAAATATCT GAATGGAGGT TGTCCTTGAA GAAAGCTTGG
GCTACTAAAT GTGGAGGAGA GCACTCTGAG TGGGTCGAGA GTTCAGAGAA TTTGAAACTG CAGTTACGAG AAATCAATGA
TAAGGTTTTC CGGTATAACC TCATTGTGCC TTTTGGTAGG CAAATGTTTG GCCTTAAGTG GGAGAAAGAG CTAGGTTACT
TGGAAGAAAA ATGAGACTTG GTGTGGTTAC TTAAATTTGA GCCAGTTGGT TCACATAGTA GAAGATAAAG ATCCTATTTA
TTTTCCTGAG GGCGGTCATG CCAGGTAATG ATCAACTGGT CGATATTATT CTGTTCGACT ATTGTTGATT ACATCAATTT
CGTAGCAATG GTTTTAGTCC GGCCAGCCCT TGATACTGTT AGGTTAGTTA TTATGATGCC TCTTTCAGGC TTATAGCTAT
ATTTATACGG TTCATAACCC CCTATCTGTG TACCTTTCCA TGTACAACCT AAGGAAACAA GAAAAAAAAA TAGTGAAATG
TACGAGACAA TAACTCTTGT TGTTCCTGCT TCAATATACT GGATATTTGA TGTATCCAAG GTTATCAAAT TCGAGAGTTT
ACGTAAACTC GTGAGAGTTG AATAAACTCG ACTCGTAAAC TTGACTCGTA AATTTGTAAG AGTTTACTTC AGATGAAAAA
AAATTATATA AATAATATCT TAATTC

>Vigan.08G290700.01
ATGGCAACGT GTCTTCGCCT CAGGGGATTT ACAACTATCA ATTCGCGCGC TCTCTTCGTT TCCACCACTA GATTCTCCTC
CTCCTCTTCT TCCTCTTCCT CTTCGTCGTC GTCATCGTCT TCCGGTAAGT CTAAAACGGG GAAGAAGTTC ATGGATCGTC
TTACGGCCGT TATCGACGCC GTTCATGATC GTAAACTACC GCCGGAGCTA CGCGGCCAGC GCAACAATGT CAGGTCAGAA
ACTGATATTA TTAACGTTGT TGAGCAAAGG ATATGGCATT CCATGGAAGA GGGCCAGTTT GAGAACTTGC CAGGCAAAGG
CAAGCCTCTT AAGCTTGACA CAAATCCTCA TGCAGATCCA GCTGAAGACA CCCTGTACCG AATCTTGTCA AAAAATGGTT
GTGCACCAGA GTGGGTCGAG CTTAACAAAG AAATAAGATC TAAAATATCT GAATGGAGGT TGTCCTTGAA GAAAGCTTGG
GCTACTAAAT GTGGAGGAGA GCACTCTGAG TGGGTCGAGA GTTCAGAGAA TTTGAAACTG CAGTTACGAG AAATCAATGA
TAAGGTTTTC CGGTATAACC TCATTGTGCC TTTTGGTAGG CAAATGTTTG GCCTTAAGTG GGAGAAAGAG CTAGGTTACT
TGGAAGAAAA ATGA

>Vigan.08G290700.01
MATCLRLRGF TTINSRALFV STTRFSSSSS SSSSSSSSSS SGKSKTGKKF MDRLTAVIDA VHDRKLPPEL RGQRNNVRSE
TDIINVVEQR IWHSMEEGQF ENLPGKGKPL KLDTNPHADP AEDTLYRILS KNGCAPEWVE LNKEIRSKIS EWRLSLKKAW
ATKCGGEHSE WVESSENLKL QLREINDKVF RYNLIVPFGR QMFGLKWEKE LGYLEEK*