GBrowse Details

Vigan.08G296800.01

Basic Information:
Name: Vigan.08G296800.01
Multiple alignment
Variant Information
Position: Chr08:37339383..37345375 (- strand)
Length: 5993
Functional Information:
Description: Similar to Uncharacterized protein. [K7LHW6, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: CAAX amino terminal protease (IPR003675)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.41,5.38,3.69,3.65,4.91,5.65,4.03,2.65
Arabidopsis thaliana homolog: AT2G36305.1
Structure :
Position: Chr08:37339383..37339581 (- strand)
Length: 199
Type: three_prime_UTR
Position: Chr08:37339582..37339739 (- strand)
Length: 158
Type: CDS
Position: Chr08:37340625..37340702 (- strand)
Length: 78
Type: CDS
Position: Chr08:37341438..37341500 (- strand)
Length: 63
Type: CDS
Position: Chr08:37341665..37341736 (- strand)
Length: 72
Type: CDS
Position: Chr08:37343461..37343572 (- strand)
Length: 112
Type: CDS
Position: Chr08:37343798..37344010 (- strand)
Length: 213
Type: CDS
Position: Chr08:37344172..37344231 (- strand)
Length: 60
Type: CDS
Position: Chr08:37344926..37345132 (- strand)
Length: 207
Type: CDS
Position: Chr08:37345133..37345375 (- strand)
Length: 243
Type: five_prime_UTR


>Vigan.08G296800.01
AAAAAAAGTT AAGAATTGAC AGAAAAAAAG GGGCCAAAAT GTACCCTTTG CTTGAAGTTG ATCCTTGGAC GGCCTTTTGA
GTCCCGGAAC ATACAGTAAC CGTTCTCAGA TAGTCAACCA AGTCCTAAAC AAATTGAAAT TGAATTCAGA CTGAGATTCC
CAATTTCCAG AAACCCTATT TTATGCCCCT TTTTTGCCTC TTCCACTCTA GGGTTTCTGC AACTGCAACA ATTAGCTTCC
GCAATGGCTG AAGAAGGTGT TGTTTTGAAT GCAATGGCGT TATTCGCTTG CATAGCAATG GCCCTCTTCT ACGTCGCCAT
CCTCTACGCT CCCACCTTCC TCCTCCGTCT CCCGCCTCCT TCTTCATTCG AAACCTACAT GATTAGACGC TTCCTCTGCG
CCATCGTTTC GTCTATCCTC TCCCTCTTCC TCTCCGTACT CATCCTCCCC GTGCAAACTA AGGAGCTGCA TCACATTGTT
GGTGTATTTG GCATCCGGAG GGACCATATT TGGCAAGCAG TGATCCTTCC TCTTTGCTTG ACCTCCCTAA TGTATGCTGG
GTCTATCTTT GACAAGTGTC TTCTGTTAGT GGCTTCTTGG AGGCAGCACG CAAGTTCTGG GGATGCCCTT TCCTTTGATT
ATTACAAAAT TGCCTTACAT CAGTTTCTTG ACTGGTTATC CGAGATTTCG TCAAATATTT TGGTGTGGCG AAATTATGTT
GTGGCACCCC TTACGGAGGA GTTGGTGTTT AGGGCATGCA TGATACCTTT ACTTCTGTGT GGAGGATTTA AAACATACAG
TGTTACACTT CTTTGCCCTA TTTTCTTCAG CTTGGCACAT TTAAATCATT TTGTGGAGAT TTACGCCAAG CAAAATTACA
GAATAATGAA GGCTGTTATG GTTATAGGTC TCCAGCTTGG CTACACTGTT GTCTTTGGGT CATATGCATC TTTTCTTTTC
ATTCGAACTG GACACCTTGT AGCTCCTTTA GTGGCGCACA TATTTTGTAA TTTCATGGGA CTGCCTGTAT TGTATTCGCA
GAGAAGTAGG ATTGTAAGTG TAACATTCAT AATAGGATTC CTGGGCTTCT TGTGGCTTCT TTTCCCAATG ACGGGCCCAG
ATTTGTATAA TGATAGAATA GATAACTGCA GTTGTTGGCA AGGGTACTGC ACATGGAGAG AAAGGATAAG AATGCCCCAG
ATGTAAATGT TAGTGTTTTT TTTAGGATGG GGTTGGTGGC CAAGGAAGAA AGAGTTCTAT TTGTGCAGAG TTTTCCTTAA
AATTGCTTCA AAGTTAGAAT TTTCCAAGGG CTTAAAAAAG ACTCCACATC ATTACATGAT TATAGTTTTG AAGAATTTTG
CTCCTCTAAA GTGCCAGAGT AATAATCAAG ATGTAGAAAT CATCA

>Vigan.08G296800.01
ATGGCTGAAG AAGGTGTTGT TTTGAATGCA ATGGCGTTAT TCGCTTGCAT AGCAATGGCC CTCTTCTACG TCGCCATCCT
CTACGCTCCC ACCTTCCTCC TCCGTCTCCC GCCTCCTTCT TCATTCGAAA CCTACATGAT TAGACGCTTC CTCTGCGCCA
TCGTTTCGTC TATCCTCTCC CTCTTCCTCT CCGTACTCAT CCTCCCCGTG CAAACTAAGG AGCTGCATCA CATTGTTGGT
GTATTTGGCA TCCGGAGGGA CCATATTTGG CAAGCAGTGA TCCTTCCTCT TTGCTTGACC TCCCTAATGT ATGCTGGGTC
TATCTTTGAC AAGTGTCTTC TGTTAGTGGC TTCTTGGAGG CAGCACGCAA GTTCTGGGGA TGCCCTTTCC TTTGATTATT
ACAAAATTGC CTTACATCAG TTTCTTGACT GGTTATCCGA GATTTCGTCA AATATTTTGG TGTGGCGAAA TTATGTTGTG
GCACCCCTTA CGGAGGAGTT GGTGTTTAGG GCATGCATGA TACCTTTACT TCTGTGTGGA GGATTTAAAA CATACAGTGT
TACACTTCTT TGCCCTATTT TCTTCAGCTT GGCACATTTA AATCATTTTG TGGAGATTTA CGCCAAGCAA AATTACAGAA
TAATGAAGGC TGTTATGGTT ATAGGTCTCC AGCTTGGCTA CACTGTTGTC TTTGGGTCAT ATGCATCTTT TCTTTTCATT
CGAACTGGAC ACCTTGTAGC TCCTTTAGTG GCGCACATAT TTTGTAATTT CATGGGACTG CCTGTATTGT ATTCGCAGAG
AAGTAGGATT GTAAGTGTAA CATTCATAAT AGGATTCCTG GGCTTCTTGT GGCTTCTTTT CCCAATGACG GGCCCAGATT
TGTATAATGA TAGAATAGAT AACTGCAGTT GTTGGCAAGG GTACTGCACA TGGAGAGAAA GGATAAGAAT GCCCCAGATG
TAA

>Vigan.08G296800.01
MAEEGVVLNA MALFACIAMA LFYVAILYAP TFLLRLPPPS SFETYMIRRF LCAIVSSILS LFLSVLILPV QTKELHHIVG
VFGIRRDHIW QAVILPLCLT SLMYAGSIFD KCLLLVASWR QHASSGDALS FDYYKIALHQ FLDWLSEISS NILVWRNYVV
APLTEELVFR ACMIPLLLCG GFKTYSVTLL CPIFFSLAHL NHFVEIYAKQ NYRIMKAVMV IGLQLGYTVV FGSYASFLFI
RTGHLVAPLV AHIFCNFMGL PVLYSQRSRI VSVTFIIGFL GFLWLLFPMT GPDLYNDRID NCSCWQGYCT WRERIRMPQM
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