VIGGS:GBrowse

Vigan.08G299300.01

Basic Information:

Name:	Vigan.08G299300.01 Multiple alignment Variant Information
Position:	Chr08:37906115..37908275 (+ strand)
Length:	2161

Functional Information:

Description:	Similar to Uncharacterized protein. [B7FH64, Medicago truncatula]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Cellular Component: small ribosomal subunit (GO:0015935)
	Molecular Function: RNA binding (GO:0003723)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein S3, C-terminal (IPR001351)
	K Homology domain, type 2 (IPR004044)
	Ribosomal protein S3, eukaryotic/archaeal (IPR005703)
	K homology domain, prokaryotic type (IPR009019)
	K homology domain-like, alpha/beta (IPR015946)
	Ribosomal protein S3, conserved site (IPR018280)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:44.07,113.75,89.33,52.55,147.52,306.78,132.40,66.53
Arabidopsis thaliana homolog:	AT5G35530.1

Automatic updates:

Name:	NM_001248397 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 40S ribosomal protein S3 (LOC100499737), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001252692 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 40S ribosomal protein S3 (LOC100808705), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:37906115..37906232 (+ strand)
Length:	118
Type:	five_prime_UTR

Position:	Chr08:37906233..37906262 (+ strand)
Length:	30
Type:	CDS

Position:	Chr08:37906382..37906529 (+ strand)
Length:	148
Type:	CDS

Position:	Chr08:37906617..37906788 (+ strand)
Length:	172
Type:	CDS

Position:	Chr08:37907304..37907358 (+ strand)
Length:	55
Type:	CDS

Position:	Chr08:37907444..37907575 (+ strand)
Length:	132
Type:	CDS

Position:	Chr08:37907685..37907855 (+ strand)
Length:	171
Type:	CDS

Position:	Chr08:37907856..37908275 (+ strand)
Length:	420
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G299300.01
TAGGGTTTCA AGTATCCCCT CTACCTATAT ATTCCACTCT CTACCCAGAA ATTAGGGTTT ATTGTCACAC CCCAGCCGTA
GCTGCCCATT GGTTTCTGCA TCACTTCGAT TCTTGACAAT GGCGACCCAA ATGAGCAAGA AGAGAAAGTT CGTGGCTGAT
GGAGTGTTTT TCGCGGAACT AAATGAGGTT TTGACACGAG AGCTGGCGGA GGATGGTTAC TCTGGTGTGG AAGTGAGGGT
TACGCCGATG CGCACTGAAA TCATCATCAG AGCTACAAGA ACCCAAGCCG TACTCGGTGA GAAGGGAAGG AGAATCAGGG
AACTTACCTC GGTGGTTCAG AAGAGATTCA AGTTTCCAGA GAACAGCGTT GAACTCTACG CTGAGAAAGT CAACAACAGG
GGACTTTGCG CCATAGCTCA GGCTGAGTCT CTTCGCTACA AGCTCCTCGG GGGACTTGCT GTACGCAGGG CTTGCTATGG
TGTTTTGAGG TTTGTCATGG AGAGTGGTGC CAAGGGATGT GAGGTGATTG TGAGTGGTAA ATTGAGAGCC CAGAGGGCAA
AATCCATGAA GTTTAAGGAT GGCTACATGA TTTCTTCTGG GCAACCTGTC AAGGATTACA TTGACTCTGC AGTGAGACAC
GTCCTCCTCA GACAGGGTGT TCTTGGCATT AAGGTGAAGA TTATGCTTGA TTGGGATCCT AAAGGGAAGC AGGGTCCTGT
AACTCCTCTC CCTGATATTG TCACAATTCA TACTCCAAAA GAGGAAGAGG AATACATCCG GCCTGCTCCA GTTCTGGCCA
ATGATATCGA GGTCCCTGTG GCTTGAAAAT ACATGGAGCA GTACTTTATA TTATTAGCAA ATGCCTTGTT TTTCTTGTAT
TCAATGTTTT TGGTCAAGGA CATATTCAAA ATTTTGTAGT TTCTTAAAGA ATTGAAGTCA TTTGTTTTAT CTTTTTTATA
CCTTTATGCT ATGTAGTTTG GATCTTGTAC TTGTGATTCA TGGCATCGAT ACATTGTGTT ATTTTCCTAA ACCTTAATTT
TTTAAGTGCA GGTGAATTTC AGAAACTAAA AATAAAGTAT TTTTGTCGTT GGAAAGTACA TGAATGCCTT TTGTAAAATA
ACGATGATCT TGTAGCCGAA TTAACTCAAT TTTTTGTACT TTTTTTTATG TTTACCTCTA GAGGTCAGAT TGACGATTGA
GCAAGTAACG TGTTGTAAGG TACATTAAGA TTGATGTCTA CCATAG

[show][hide][copy]CDS

>Vigan.08G299300.01
ATGGCGACCC AAATGAGCAA GAAGAGAAAG TTCGTGGCTG ATGGAGTGTT TTTCGCGGAA CTAAATGAGG TTTTGACACG
AGAGCTGGCG GAGGATGGTT ACTCTGGTGT GGAAGTGAGG GTTACGCCGA TGCGCACTGA AATCATCATC AGAGCTACAA
GAACCCAAGC CGTACTCGGT GAGAAGGGAA GGAGAATCAG GGAACTTACC TCGGTGGTTC AGAAGAGATT CAAGTTTCCA
GAGAACAGCG TTGAACTCTA CGCTGAGAAA GTCAACAACA GGGGACTTTG CGCCATAGCT CAGGCTGAGT CTCTTCGCTA
CAAGCTCCTC GGGGGACTTG CTGTACGCAG GGCTTGCTAT GGTGTTTTGA GGTTTGTCAT GGAGAGTGGT GCCAAGGGAT
GTGAGGTGAT TGTGAGTGGT AAATTGAGAG CCCAGAGGGC AAAATCCATG AAGTTTAAGG ATGGCTACAT GATTTCTTCT
GGGCAACCTG TCAAGGATTA CATTGACTCT GCAGTGAGAC ACGTCCTCCT CAGACAGGGT GTTCTTGGCA TTAAGGTGAA
GATTATGCTT GATTGGGATC CTAAAGGGAA GCAGGGTCCT GTAACTCCTC TCCCTGATAT TGTCACAATT CATACTCCAA
AAGAGGAAGA GGAATACATC CGGCCTGCTC CAGTTCTGGC CAATGATATC GAGGTCCCTG TGGCTTGA

[show][hide][copy]PROTEIN

>Vigan.08G299300.01
MATQMSKKRK FVADGVFFAE LNEVLTRELA EDGYSGVEVR VTPMRTEIII RATRTQAVLG EKGRRIRELT SVVQKRFKFP
ENSVELYAEK VNNRGLCAIA QAESLRYKLL GGLAVRRACY GVLRFVMESG AKGCEVIVSG KLRAQRAKSM KFKDGYMISS
GQPVKDYIDS AVRHVLLRQG VLGIKVKIML DWDPKGKQGP VTPLPDIVTI HTPKEEEEYI RPAPVLANDI EVPVA*