GBrowse Details

Vigan.08G299800.01

Basic Information:
Name: Vigan.08G299800.01
Multiple alignment
Variant Information
Position: Chr08:37975014..37977719 (+ strand)
Length: 2706
Functional Information:
Description: Similar to 29 kDa ribonucleoprotein. [V5NAK7, Phaseolus vulgaris]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.75,0.32,31.21,185.45,0.05,33.04,1.90,24.17
Arabidopsis thaliana homolog: AT1G60000.1
Automatic updates:
Name: NM_001254599 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 31 kDa ribonucleoprotein, chloroplastic-like (LOC100820203), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:37975014..37975236 (+ strand)
Length: 223
Type: five_prime_UTR
Position: Chr08:37975237..37975647 (+ strand)
Length: 411
Type: CDS
Position: Chr08:37976091..37976192 (+ strand)
Length: 102
Type: CDS
Position: Chr08:37976306..37976578 (+ strand)
Length: 273
Type: CDS
Position: Chr08:37977342..37977401 (+ strand)
Length: 60
Type: CDS
Position: Chr08:37977402..37977719 (+ strand)
Length: 318
Type: three_prime_UTR


>Vigan.08G299800.01
GAGAAATATA GCGAAAAGTT ATACACATTT GATCTTATAC ATCTGGGCAT ATGCTATGGA CTTGAAGTCA TCTTATCTTG
ACATATCCAT TCTTACCAAC AACAATAGAC AGTGGACACA ATCATGCCAC GCAAGCATAA GAACAAGCCT TTTCTCTCTC
TCATCATGTC ATAAACACTG ATCATCTTTT AACGTAAGAT TTTTGTGTTT CATCGGTCAC AAAATGGCTG CCACTGCTGC
AGGCATAGCT TCGTTGTTTT CTTCTTCCAT TAGCAACATC AAATGTCTTC GTTCCAAGCA CTGCTCCATG ATGGATCCCC
TTATGACAGC AATGCCGTCA AACCGCATGT CACACTTGGT GGAACCTTTG TCCATCGGAG GTACCATGTC GCATAGGTTG
TGGGGCCCTA GAATTTCTGC TGCTGTTGCA CAAGAAGAGC TGGTTTCTGC GGATGATGCT GGTTTCGTTG AAGAAGAGAA
AGTGGAGGAT AATGAAGGGG AAGTGGTGGC AGAACAAGAC TCAGATGAAT CCTTTGCTAG CACTAAGCTT TATTTTGGGA
ATTTGCCTTA TAGTGTTGAT AGTGCCATAC TTGCAGGGCT AATTCAGGAT TATGGTAGCG CTGAACTAAT TGAGGTTCTT
TACGACAGGG ACACTGGAAA AAGTAGAGGC TTTGCATTTG TGACAATGAG TTGCATTGAA GACTGTAATA CAGTGATAGA
AAATCTTGAC GGAAAAGAAT TCATGGGCAG AACCCTGAGG GTGAACTTCT CTAACAAACC AAAAGCAAAA GAACCCTTGT
ACCCTGAAAC TGAGCATAAA CTCTTTGTTG GGAATCTGTC ATGGTCAGTA ACTAATGAGA TTTTGACACA AGCCTTTCAA
GAATATGGAA CGGTGGTTGG AGCTAGGGTC TTATATGATG GAGAAACTGG AAGGTCACGT GGCTATGGCT TTGTTTGCTT
TTCGACAAAA GCAGAGATGG AATCTGCTCT CGAAGCCTTG AATGATGTGG AACTAGAAGG AAGGGCTATG CGTGTGAGTT
TGGCTCAAGG AAAACGTGCA CAAGGCTAAT AGAAAGTTGG GAAGTATGAG ATGAGAAATG TTCAACAATG GTGCCATAGA
AAAAAGAGAA GGAGATGCTG GTATACCAAC CCTGATGCAC TTAACTGCTG CAATCTGATG ATGAATTCCT TTTCATTTCT
TGGTGTATTG TATAAATTAT TTACTCCCAT TTTCAATAGA TCTGCTGACC CCAATGCTGT CATATTTGTT TTTAACATTT
TTTTTGCTGA TACTACTAAC ATTGGCCAAT GAAATGACAA ACTTTAAAAA TACCTATTCA TTGCTGCAAA ACATTACAAA
TGAGTTACTT TAAAATTCTG AAAAATC

>Vigan.08G299800.01
ATGGCTGCCA CTGCTGCAGG CATAGCTTCG TTGTTTTCTT CTTCCATTAG CAACATCAAA TGTCTTCGTT CCAAGCACTG
CTCCATGATG GATCCCCTTA TGACAGCAAT GCCGTCAAAC CGCATGTCAC ACTTGGTGGA ACCTTTGTCC ATCGGAGGTA
CCATGTCGCA TAGGTTGTGG GGCCCTAGAA TTTCTGCTGC TGTTGCACAA GAAGAGCTGG TTTCTGCGGA TGATGCTGGT
TTCGTTGAAG AAGAGAAAGT GGAGGATAAT GAAGGGGAAG TGGTGGCAGA ACAAGACTCA GATGAATCCT TTGCTAGCAC
TAAGCTTTAT TTTGGGAATT TGCCTTATAG TGTTGATAGT GCCATACTTG CAGGGCTAAT TCAGGATTAT GGTAGCGCTG
AACTAATTGA GGTTCTTTAC GACAGGGACA CTGGAAAAAG TAGAGGCTTT GCATTTGTGA CAATGAGTTG CATTGAAGAC
TGTAATACAG TGATAGAAAA TCTTGACGGA AAAGAATTCA TGGGCAGAAC CCTGAGGGTG AACTTCTCTA ACAAACCAAA
AGCAAAAGAA CCCTTGTACC CTGAAACTGA GCATAAACTC TTTGTTGGGA ATCTGTCATG GTCAGTAACT AATGAGATTT
TGACACAAGC CTTTCAAGAA TATGGAACGG TGGTTGGAGC TAGGGTCTTA TATGATGGAG AAACTGGAAG GTCACGTGGC
TATGGCTTTG TTTGCTTTTC GACAAAAGCA GAGATGGAAT CTGCTCTCGA AGCCTTGAAT GATGTGGAAC TAGAAGGAAG
GGCTATGCGT GTGAGTTTGG CTCAAGGAAA ACGTGCACAA GGCTAA

>Vigan.08G299800.01
MAATAAGIAS LFSSSISNIK CLRSKHCSMM DPLMTAMPSN RMSHLVEPLS IGGTMSHRLW GPRISAAVAQ EELVSADDAG
FVEEEKVEDN EGEVVAEQDS DESFASTKLY FGNLPYSVDS AILAGLIQDY GSAELIEVLY DRDTGKSRGF AFVTMSCIED
CNTVIENLDG KEFMGRTLRV NFSNKPKAKE PLYPETEHKL FVGNLSWSVT NEILTQAFQE YGTVVGARVL YDGETGRSRG
YGFVCFSTKA EMESALEALN DVELEGRAMR VSLAQGKRAQ G*