GBrowse Details

Vigan.08G299800.01

Basic Information:
Name: Vigan.08G299800.01
Multiple alignment
Variant Information
Position: Chr08:37975014..37977719 (+ strand)
Length: 2706
Functional Information:
Description: Similar to 29 kDa ribonucleoprotein. [V5NAK7, Phaseolus vulgaris]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.75,0.32,31.21,185.45,0.05,33.04,1.90,24.17
Arabidopsis thaliana homolog: AT1G60000.1
Automatic updates:
Name: NM_001254599 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 31 kDa ribonucleoprotein, chloroplastic-like (LOC100820203), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:37975014..37975236 (+ strand)
Length: 223
Type: five_prime_UTR
Position: Chr08:37975237..37975647 (+ strand)
Length: 411
Type: CDS
Position: Chr08:37976091..37976192 (+ strand)
Length: 102
Type: CDS
Position: Chr08:37976306..37976578 (+ strand)
Length: 273
Type: CDS
Position: Chr08:37977342..37977401 (+ strand)
Length: 60
Type: CDS
Position: Chr08:37977402..37977719 (+ strand)
Length: 318
Type: three_prime_UTR

>Vigan.08G299800.01 class=Sequence position=Chr08:37975014..37977719 (+ strand)
GAGAAATATA GCGAAAAGTT ATACACATTT GATCTTATAC ATCTGGGCAT ATGCTATGGA CTTGAAGTCA TCTTATCTTG
ACATATCCAT TCTTACCAAC AACAATAGAC AGTGGACACA ATCATGCCAC GCAAGCATAA GAACAAGCCT TTTCTCTCTC
TCATCATGTC ATAAACACTG ATCATCTTTT AACGTAAGAT TTTTGTGTTT CATCGGTCAC AAAATGGCTG CCACTGCTGC
AGGCATAGCT TCGTTGTTTT CTTCTTCCAT TAGCAACATC AAATGTCTTC GTTCCAAGCA CTGCTCCATG ATGGATCCCC
TTATGACAGC AATGCCGTCA AACCGCATGT CACACTTGGT GGAACCTTTG TCCATCGGAG GTACCATGTC GCATAGGTTG
TGGGGCCCTA GAATTTCTGC TGCTGTTGCA CAAGAAGAGC TGGTTTCTGC GGATGATGCT GGTTTCGTTG AAGAAGAGAA
AGTGGAGGAT AATGAAGGGG AAGTGGTGGC AGAACAAGAC TCAGATGAAT CCTTTGCTAG CACTAAGCTT TATTTTGGGA
ATTTGCCTTA TAGTGTTGAT AGTGCCATAC TTGCAGGGCT AATTCAGGAT TATGGTAGCG CTGAACTAAT TGAGGTATTT
ATGCAATTCA TTGACTTTAA CATCTATAAA TTGTCAAGGT AAAAAGTTTA ACACAGTCTA TGGTATAACT CAACAAATTC
ACACAATTTA TGGTTGAAAG ATAGAGTAAA GAGGGCATAA ACTATATACT CTTAGAACTT TATCTACTTG AGCAAATTAT
GCAGCTTGAA ATTGGATGCA TGAGATCTAT AAGATTGTAG TATACTGGGA GTAAATTTAT AGATTTCTTT TATTTAAATT
CTTCCTGGTT TGAAGTTGTA TTGTATCCAC TGATTTATGA ACATGTGGCA GCGTTCAATT GATTGTGTTG CATGTTGTCA
CTTCATAGAG CACAATTCTA TGCTAGCATA CATCTCTCAA ACTTGCAACT CATTGATCCA ACTTGCATTT AACGATTCAG
TAAAGTTGAT GATTTATTTA TATACATATA TGTTTAGGTT CTTTACGACA GGGACACTGG AAAAAGTAGA GGCTTTGCAT
TTGTGACAAT GAGTTGCATT GAAGACTGTA ATACAGTGAT AGAAAATCTT GACGGAAAAG TAAGGATTAC AGTGACTTTC
CTCTCTCCAG CATTAGCTCA CATGCTATGT TCAATTGGTT TGTTCTGATG ATACCCTTTT GCATGCTGAA TTTTGTGAAT
GTAACTTCAC AGGAATTCAT GGGCAGAACC CTGAGGGTGA ACTTCTCTAA CAAACCAAAA GCAAAAGAAC CCTTGTACCC
TGAAACTGAG CATAAACTCT TTGTTGGGAA TCTGTCATGG TCAGTAACTA ATGAGATTTT GACACAAGCC TTTCAAGAAT
ATGGAACGGT GGTTGGAGCT AGGGTCTTAT ATGATGGAGA AACTGGAAGG TCACGTGGCT ATGGCTTTGT TTGCTTTTCG
ACAAAAGCAG AGATGGAATC TGCTCTCGAA GCCTTGAATG ATGTGGTATT TTACTCCCCA ACTCTTCACT CTTGTACTGG
TTGTGCTTTT CTAAACTGAG AACTATTTTA TGGCTTTTCT ATATACAAAA CTTTAGGTGA TTTTAGAACT ATGAGTTGAA
ACTTTGCCTT GTAATTAGAG ATAATAGAGA AGTGTTAAGA AATCCCACGT CGACTAAAAA CAAACAAGTT TATCGTATGT
AATAGATACA AACTTCATTT AAGATTGAGT TAAAGATAGC ATTAAAACCA TCCAAAATCT ATATAAGATT TGTTTTAGAG
CATAATAAAA GTGTTAGAAA GCTCATGTCG ATTAAAAACA AACAAGTTTA TCGTATGTAA ATAGATACGA ACTTCATTTA
AGATTGAGTT AAAGATAGTA TCAGAACCAT CTAAAATCTA TATAAGTTTT GCTGTTTGTT GGAACTATAA TGATAGTGGT
AGTTGTGAAA AGCATACATT GCCAACACAA AAGACATTTT AATGCTTATT CTTTTCAGTA ACAGAAAGCA TTTTGAGAGG
GTGTACTTTT AAGTTATGTG GTCATGCACT CACTGTAAAA CCAGTAAAAC AGTTTTCCAA TGTCATTCGT TCAATCACAA
ACCATCATTA GTATGGTTTT TAAGATTATC ATTATTAAAG TTATCAAACT CATTGTGAAG GTTGGTTTGT GATTGACACA
TAGTGCAAAT TTATTTGCTC ATGTAAACTT GAACTTGGTG CATAAGATGC AAAAAACGAA TGTTATTTTG GTTATTGATA
TATATCAGGA ACTAGAAGGA AGGGCTATGC GTGTGAGTTT GGCTCAAGGA AAACGTGCAC AAGGCTAATA GAAAGTTGGG
AAGTATGAGA TGAGAAATGT TCAACAATGG TGCCATAGAA AAAAGAGAAG GAGATGCTGG TATACCAACC CTGATGCACT
TAACTGCTGC AATCTGATGA TGAATTCCTT TTCATTTCTT GGTGTATTGT ATAAATTATT TACTCCCATT TTCAATAGAT
CTGCTGACCC CAATGCTGTC ATATTTGTTT TTAACATTTT TTTTGCTGAT ACTACTAACA TTGGCCAATG AAATGACAAA
CTTTAAAAAT ACCTATTCAT TGCTGCAAAA CATTACAAAT GAGTTACTTT AAAATTCTGA AAAATC

>Vigan.08G299800.01
GAGAAATATA GCGAAAAGTT ATACACATTT GATCTTATAC ATCTGGGCAT ATGCTATGGA CTTGAAGTCA TCTTATCTTG
ACATATCCAT TCTTACCAAC AACAATAGAC AGTGGACACA ATCATGCCAC GCAAGCATAA GAACAAGCCT TTTCTCTCTC
TCATCATGTC ATAAACACTG ATCATCTTTT AACGTAAGAT TTTTGTGTTT CATCGGTCAC AAAATGGCTG CCACTGCTGC
AGGCATAGCT TCGTTGTTTT CTTCTTCCAT TAGCAACATC AAATGTCTTC GTTCCAAGCA CTGCTCCATG ATGGATCCCC
TTATGACAGC AATGCCGTCA AACCGCATGT CACACTTGGT GGAACCTTTG TCCATCGGAG GTACCATGTC GCATAGGTTG
TGGGGCCCTA GAATTTCTGC TGCTGTTGCA CAAGAAGAGC TGGTTTCTGC GGATGATGCT GGTTTCGTTG AAGAAGAGAA
AGTGGAGGAT AATGAAGGGG AAGTGGTGGC AGAACAAGAC TCAGATGAAT CCTTTGCTAG CACTAAGCTT TATTTTGGGA
ATTTGCCTTA TAGTGTTGAT AGTGCCATAC TTGCAGGGCT AATTCAGGAT TATGGTAGCG CTGAACTAAT TGAGGTTCTT
TACGACAGGG ACACTGGAAA AAGTAGAGGC TTTGCATTTG TGACAATGAG TTGCATTGAA GACTGTAATA CAGTGATAGA
AAATCTTGAC GGAAAAGAAT TCATGGGCAG AACCCTGAGG GTGAACTTCT CTAACAAACC AAAAGCAAAA GAACCCTTGT
ACCCTGAAAC TGAGCATAAA CTCTTTGTTG GGAATCTGTC ATGGTCAGTA ACTAATGAGA TTTTGACACA AGCCTTTCAA
GAATATGGAA CGGTGGTTGG AGCTAGGGTC TTATATGATG GAGAAACTGG AAGGTCACGT GGCTATGGCT TTGTTTGCTT
TTCGACAAAA GCAGAGATGG AATCTGCTCT CGAAGCCTTG AATGATGTGG AACTAGAAGG AAGGGCTATG CGTGTGAGTT
TGGCTCAAGG AAAACGTGCA CAAGGCTAAT AGAAAGTTGG GAAGTATGAG ATGAGAAATG TTCAACAATG GTGCCATAGA
AAAAAGAGAA GGAGATGCTG GTATACCAAC CCTGATGCAC TTAACTGCTG CAATCTGATG ATGAATTCCT TTTCATTTCT
TGGTGTATTG TATAAATTAT TTACTCCCAT TTTCAATAGA TCTGCTGACC CCAATGCTGT CATATTTGTT TTTAACATTT
TTTTTGCTGA TACTACTAAC ATTGGCCAAT GAAATGACAA ACTTTAAAAA TACCTATTCA TTGCTGCAAA ACATTACAAA
TGAGTTACTT TAAAATTCTG AAAAATC

>Vigan.08G299800.01
ATGGCTGCCA CTGCTGCAGG CATAGCTTCG TTGTTTTCTT CTTCCATTAG CAACATCAAA TGTCTTCGTT CCAAGCACTG
CTCCATGATG GATCCCCTTA TGACAGCAAT GCCGTCAAAC CGCATGTCAC ACTTGGTGGA ACCTTTGTCC ATCGGAGGTA
CCATGTCGCA TAGGTTGTGG GGCCCTAGAA TTTCTGCTGC TGTTGCACAA GAAGAGCTGG TTTCTGCGGA TGATGCTGGT
TTCGTTGAAG AAGAGAAAGT GGAGGATAAT GAAGGGGAAG TGGTGGCAGA ACAAGACTCA GATGAATCCT TTGCTAGCAC
TAAGCTTTAT TTTGGGAATT TGCCTTATAG TGTTGATAGT GCCATACTTG CAGGGCTAAT TCAGGATTAT GGTAGCGCTG
AACTAATTGA GGTTCTTTAC GACAGGGACA CTGGAAAAAG TAGAGGCTTT GCATTTGTGA CAATGAGTTG CATTGAAGAC
TGTAATACAG TGATAGAAAA TCTTGACGGA AAAGAATTCA TGGGCAGAAC CCTGAGGGTG AACTTCTCTA ACAAACCAAA
AGCAAAAGAA CCCTTGTACC CTGAAACTGA GCATAAACTC TTTGTTGGGA ATCTGTCATG GTCAGTAACT AATGAGATTT
TGACACAAGC CTTTCAAGAA TATGGAACGG TGGTTGGAGC TAGGGTCTTA TATGATGGAG AAACTGGAAG GTCACGTGGC
TATGGCTTTG TTTGCTTTTC GACAAAAGCA GAGATGGAAT CTGCTCTCGA AGCCTTGAAT GATGTGGAAC TAGAAGGAAG
GGCTATGCGT GTGAGTTTGG CTCAAGGAAA ACGTGCACAA GGCTAA

>Vigan.08G299800.01
MAATAAGIAS LFSSSISNIK CLRSKHCSMM DPLMTAMPSN RMSHLVEPLS IGGTMSHRLW GPRISAAVAQ EELVSADDAG
FVEEEKVEDN EGEVVAEQDS DESFASTKLY FGNLPYSVDS AILAGLIQDY GSAELIEVLY DRDTGKSRGF AFVTMSCIED
CNTVIENLDG KEFMGRTLRV NFSNKPKAKE PLYPETEHKL FVGNLSWSVT NEILTQAFQE YGTVVGARVL YDGETGRSRG
YGFVCFSTKA EMESALEALN DVELEGRAMR VSLAQGKRAQ G*