GBrowse Details

Vigan.08G301400.01

Basic Information:
Name: Vigan.08G301400.01
Multiple alignment
Variant Information
Position: Chr08:38285469..38335133 (+ strand)
Length: 49665
Functional Information:
Description: Similar to DNA mismatch repair protein. [Q2TMH4, Phaseolus vulgaris]
GO: Biological Process: mismatch repair (GO:0006298)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: mismatched DNA binding (GO:0030983)
InterPro: GIY-YIG nuclease superfamily (IPR000305)
DNA mismatch repair protein MutS, C-terminal (IPR000432)
DNA mismatch repair protein MutS, type 1 (IPR005748)
DNA mismatch repair protein MutS-like, N-terminal (IPR007695)
DNA mismatch repair protein MutS, N-terminal (IPR016151)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.01,1.51,0.85,1.15,1.38,0.73,0.70,1.39
Arabidopsis thaliana homolog: AT3G24320.1
Automatic updates:
Name: NM_001251288 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DNA mismatch repair protein (MSH1), mRNA.
PubMed ID: 25249442 NCBI(pubmed)
16830098 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:38285469..38285564 (+ strand)
Length: 96
Type: five_prime_UTR
Position: Chr08:38285565..38285683 (+ strand)
Length: 119
Type: CDS
Position: Chr08:38287865..38288006 (+ strand)
Length: 142
Type: CDS
Position: Chr08:38288141..38288238 (+ strand)
Length: 98
Type: CDS
Position: Chr08:38290172..38290247 (+ strand)
Length: 76
Type: CDS
Position: Chr08:38290716..38290835 (+ strand)
Length: 120
Type: CDS
Position: Chr08:38290942..38290989 (+ strand)
Length: 48
Type: CDS
Position: Chr08:38291116..38291180 (+ strand)
Length: 65
Type: CDS
Position: Chr08:38302902..38302987 (+ strand)
Length: 86
Type: CDS
Position: Chr08:38305029..38305193 (+ strand)
Length: 165
Type: CDS
Position: Chr08:38305687..38305796 (+ strand)
Length: 110
Type: CDS
Position: Chr08:38305903..38306008 (+ strand)
Length: 106
Type: CDS
Position: Chr08:38306088..38306163 (+ strand)
Length: 76
Type: CDS
Position: Chr08:38308193..38308251 (+ strand)
Length: 59
Type: CDS
Position: Chr08:38313413..38313480 (+ strand)
Length: 68
Type: CDS
Position: Chr08:38316460..38316633 (+ strand)
Length: 174
Type: CDS
Position: Chr08:38317315..38317521 (+ strand)
Length: 207
Type: CDS
Position: Chr08:38317613..38317869 (+ strand)
Length: 257
Type: CDS
Position: Chr08:38317980..38318123 (+ strand)
Length: 144
Type: CDS
Position: Chr08:38323474..38323531 (+ strand)
Length: 58
Type: CDS
Position: Chr08:38323861..38324157 (+ strand)
Length: 297
Type: CDS
Position: Chr08:38333330..38334022 (+ strand)
Length: 693
Type: CDS
Position: Chr08:38334762..38334971 (+ strand)
Length: 210
Type: CDS
Position: Chr08:38334972..38335133 (+ strand)
Length: 162
Type: three_prime_UTR


>Vigan.08G301400.01
GTTTTGGTTT CCTCTTTTCT TTTTAGTTAA AACCCTTCCC TTCGTGTCTG TGGCGGGAAC TCACTGTGCT TGCACTCTCT
CTCTACCCTT CACGCAATGT ACAGGGTAGT CACTAGAAAC GTCGCCGTTT TCCTGCCTCG TTGCCGCTCT CTTTTGCACT
TCTCTCATTC GCCATTTCCC ATTTTCATTT CATGTGTTCC CTCTCGCTTC CTCCGAATAA ATAGATGTGT AAAGAATGTA
TCGGGTTATA TGGAAAACAA GGTTTCAAGG GGGAGTAGTA GGACTACCAA GAAGCCAAAA GTATCAAAGA ACGGTTTAGA
TGATAAAGAT CTTCCTCACA TATTGTGGTG GAAGGAGAGG TTGCAAATGT GCAAAAAGTT TTCAACTATC CAACTAATTG
AAAAACTTGA ATTTTCTAAT TTGCTTGGCC TGGATTCCAA ATTGAAAAAT GGAAGTGTAA AGGAAGGAAC ACTCAACTGG
GAAATGTTGC AGTTCAAGTC AAAATTTCCA CGTCAAGTAT TACTCTGCAG AGTTGGGGAA TTCTATGAAG CTTGGGGAAT
AGATGCTTGT GTGCTTGTTG AATATGCTGG TTTAAATCCC TGTGGTGGTC TCCAATCAGA TTGTGTTCCA AGGGCTGGTT
GTCCTGTTAT GAATCTTCGA CAAACTTTAG ATGATCTAAC TCAAAATGGT TATTCAGTGT GCATCGTGGA GGAAGTTCAG
GGCCCAACTC AAGCTCGATC CAGGAAACGT CGGTTTATAT CTGGGCATGC TCATCCTGGA AATCCATATG TATATGGACT
TGCTGCAGTT GATCATGATC TCAACTTTCC CGAACCAATG CCTGTAATAG GAATATCTTA TTCTGCGAGG GGCTATTGCA
TTAACATGGT GCTAGAGACC ATGAAAACAT TCTCCTCTGA AGATTGCTTG ACAGAAGAAG CAATTGTTAC AAAGCTTCGT
ACTTGTCAAT ATCATCACTT ATTTTTGCAT ACATCTTTAA AGCAGGATTC TTGTGGAACA TGCAAATGGG GAGAATTCGG
TGAGGGGGGT CTCCTATGGG GAGAATGTAG TTCTAGACAT TTTGAATGGT TTGATGGCAA CCCTCTCTCT GATCTCTTGA
TCAAGGTAAA GGAGCTTTAT GGCCTTGGTG ATGAGGTTAA TTTTCGGAAC GCAACTGTAT CCTCGGCACA TAGGGCTCGA
CCTTTAACTC TTGGAACATC TACTCAAATT GGTGCCATTC AAACGGAAGG AATACCTTCT TTGTTAAAGG TCTTACTTCC
ACTTAGTTGC AACGGATTAC CAGTTCTGTA TATAAGGAAT CTTCTCTTGA ATCCTCCTTC TTATGAGATT GCATCCAAAA
TTCAGGAAAC ATGCAAACTT ATGAGTAGTT TAACGTGCTC AATTCCAGAA TTTACTTGTG TTTCTTCAGC AAAGCTTGTA
AAGCTACTTG AATGGAGAGA GGTCAATCAT ATGGAATTTT GTAGAATAAA GAATGTGGTC GATGAAATTT TGCAGATGTA
TAGAACCCTT GAGCTCAATG AAATATTGGA AAGTTTAATC GCACCCACGT GGGCGACAAC TGGGTTAGAA ATTGACTTTG
AAACCTTGGT TGCTGGATGT GAAGTTGCAT CTAGTAAGAT TGGTGAAATA ATCTCTCTGG ATGGTGGGAA TGATCAGAAA
GTCAACTATT TCTCTCTTAT TCCTCATGAA TTTTTTGAAG ATATGGAGTC TAAATGGAAA GGTCGAATAA AAAGAATCCA
CATAGATGAC GTGTTTACTG CAGTGCAAAA AGCAGCTGAG GTCTTGCACC TAGCAGTCAC TGAAGATTTT GTTCCTGTTG
TTTCTAGAGT AAAGGCTACT ATAGCCCCAC TTGGAGGTCC TAGGGGGGAA ATTTGTTATG CTCGTGAGCA TGAGGCAGTT
TGGTTCAGAG GCAAACGCTT TACACCAAAT TTGTGGTCTG GTAGCCCTGG GGAGGAACAA ATTAAACAGC TTAGGCATGC
TTTAGATTCT AAAGGTAAAA GGGTTGGGGA GGAATGGTTT ACCACACCGA AGGTTGAGGC TGCATTAACA AGGTACCATG
AAGCAAATGC CAAGGCAACA GAACGAGTTT TGGAAATTTT AAGGGAACTC GCTACTGAAT TGCATTACAG TATAAACATT
CTTGTCTTTT CATCCACACT ACTTGTTATT ACCAAAGCTT TATTCGCTCA TGCAAGTGAA GGGAGAAGAA GGAGATGGGT
TTTTCCAACA CTTGCAGATT CGAATGGGTT TGAGGATGTA AAATCGTCGG ACAAAACCCA TGGGATGAAG ATAGTTGGTT
TATCACCATA TTGGATCCAC ATCGCGGAGG GTGTTGTGCG TAATGATGTT GATATGGAAT CATTATTTCT TTTGACAGGA
CCGAATGGTG GTGGGAAATC AAGTTTACTT CGATCAATTT GTGCTGCTGC ACTACTTGGG ATATGTGGAC TCATGGTTCC
TGCAGAATCA GCCGTGATTC CTTATTTTGA CTCCATCACA CTTCATATGA AGTCATATGA TAGTCCAGCT GATAAAAAGA
GTTCCTTTCA GGTGGAAATG TCAGAACTTC GATCCATCAT TGGCGGAACC ACCAAAAGGA GCCTTGTACT TGTTGATGAA
ATTTGCCGAG GAACAGAAAC TGCAAAAGGG ACTTGTATTG CTGGTAGCAT CATTGAAACT CTAGAAAGAA TTGGTTGTCT
GGGTGTTGTG TCCACTCACT TGCATGGAAT ATTTACTTTG CCCCTAAACA TCACAAGCAC TGTGCGCAAA GCAATGGGCA
CAACGTCCAT TGATGGACAA ATAATGCCTA CGTGGAAGCT GACAGATGGG GTCTGTAAGG AAAGTCTTGC TTTTGAAACT
GCCATTAGGG AAGGAATTCC TGAGCCTATT ATCAGAAGAG CTGAATATCT TTATCAGTCA GTTTATGCTG AGGAAAATTT
CCCAAATGAA GACAAGTTTT CTACTTGCAA CAATTTTAAT AATTTGAATA CAACACGTCT TCATTCTAAA AGGTTCTCAT
CAGGAGCTAA TCAAATGGAA GTTTTACGCC AGGAAGTTGA AAGAGCTGTC ACTGGGATAT GCCAGGATTA TATATTGGAG
CGGAAAAGCA AAAGGATTGC ATTGGAGCTT CCTGAGATAA AATGTCTCTT AATCGGTACA AGGGAGCTGC CACCTCCATC
GGTTGTAGGT TCTTCATGCG TCTATGTGAT TTTAAGGTCA GATAAAAAGC TCTACGTAGG AGAGACAGAT GATCTTGAGG
GACGGGTTCG AAGACATAGA TTGAAAGAAG GTATGCATGA AGCATCATTC CTTTATTTCC TTGTCCCTGG AAAAAGCATG
GCATGCGAAT TTGAATCTCT GCTCATCAAC CAGCTTTCTA GTCAAGGCTT CCAACTGAGC AACACGTCAG ATGGTAAACA
TAGGAACTTT GGCACTTCCA ACATGTATGC ATAACTAGAT GATAGACATT GATAATATCT AATTTAATTT TTCTGCCAGT
TTTATATGGC GAAATCACTT TAAAAGTTTG GGAAGTAATG TCTGCAGCAT TTTTGTTAGA ATTAGTGGCT GTAGCTGTAT
TAATGTACTT TTGTCAATTA TCTTACAAGT ACAAAA

>Vigan.08G301400.01
ATGTACAGGG TAGTCACTAG AAACGTCGCC GTTTTCCTGC CTCGTTGCCG CTCTCTTTTG CACTTCTCTC ATTCGCCATT
TCCCATTTTC ATTTCATGTG TTCCCTCTCG CTTCCTCCGA ATAAATAGAT GTGTAAAGAA TGTATCGGGT TATATGGAAA
ACAAGGTTTC AAGGGGGAGT AGTAGGACTA CCAAGAAGCC AAAAGTATCA AAGAACGGTT TAGATGATAA AGATCTTCCT
CACATATTGT GGTGGAAGGA GAGGTTGCAA ATGTGCAAAA AGTTTTCAAC TATCCAACTA ATTGAAAAAC TTGAATTTTC
TAATTTGCTT GGCCTGGATT CCAAATTGAA AAATGGAAGT GTAAAGGAAG GAACACTCAA CTGGGAAATG TTGCAGTTCA
AGTCAAAATT TCCACGTCAA GTATTACTCT GCAGAGTTGG GGAATTCTAT GAAGCTTGGG GAATAGATGC TTGTGTGCTT
GTTGAATATG CTGGTTTAAA TCCCTGTGGT GGTCTCCAAT CAGATTGTGT TCCAAGGGCT GGTTGTCCTG TTATGAATCT
TCGACAAACT TTAGATGATC TAACTCAAAA TGGTTATTCA GTGTGCATCG TGGAGGAAGT TCAGGGCCCA ACTCAAGCTC
GATCCAGGAA ACGTCGGTTT ATATCTGGGC ATGCTCATCC TGGAAATCCA TATGTATATG GACTTGCTGC AGTTGATCAT
GATCTCAACT TTCCCGAACC AATGCCTGTA ATAGGAATAT CTTATTCTGC GAGGGGCTAT TGCATTAACA TGGTGCTAGA
GACCATGAAA ACATTCTCCT CTGAAGATTG CTTGACAGAA GAAGCAATTG TTACAAAGCT TCGTACTTGT CAATATCATC
ACTTATTTTT GCATACATCT TTAAAGCAGG ATTCTTGTGG AACATGCAAA TGGGGAGAAT TCGGTGAGGG GGGTCTCCTA
TGGGGAGAAT GTAGTTCTAG ACATTTTGAA TGGTTTGATG GCAACCCTCT CTCTGATCTC TTGATCAAGG TAAAGGAGCT
TTATGGCCTT GGTGATGAGG TTAATTTTCG GAACGCAACT GTATCCTCGG CACATAGGGC TCGACCTTTA ACTCTTGGAA
CATCTACTCA AATTGGTGCC ATTCAAACGG AAGGAATACC TTCTTTGTTA AAGGTCTTAC TTCCACTTAG TTGCAACGGA
TTACCAGTTC TGTATATAAG GAATCTTCTC TTGAATCCTC CTTCTTATGA GATTGCATCC AAAATTCAGG AAACATGCAA
ACTTATGAGT AGTTTAACGT GCTCAATTCC AGAATTTACT TGTGTTTCTT CAGCAAAGCT TGTAAAGCTA CTTGAATGGA
GAGAGGTCAA TCATATGGAA TTTTGTAGAA TAAAGAATGT GGTCGATGAA ATTTTGCAGA TGTATAGAAC CCTTGAGCTC
AATGAAATAT TGGAAAGTTT AATCGCACCC ACGTGGGCGA CAACTGGGTT AGAAATTGAC TTTGAAACCT TGGTTGCTGG
ATGTGAAGTT GCATCTAGTA AGATTGGTGA AATAATCTCT CTGGATGGTG GGAATGATCA GAAAGTCAAC TATTTCTCTC
TTATTCCTCA TGAATTTTTT GAAGATATGG AGTCTAAATG GAAAGGTCGA ATAAAAAGAA TCCACATAGA TGACGTGTTT
ACTGCAGTGC AAAAAGCAGC TGAGGTCTTG CACCTAGCAG TCACTGAAGA TTTTGTTCCT GTTGTTTCTA GAGTAAAGGC
TACTATAGCC CCACTTGGAG GTCCTAGGGG GGAAATTTGT TATGCTCGTG AGCATGAGGC AGTTTGGTTC AGAGGCAAAC
GCTTTACACC AAATTTGTGG TCTGGTAGCC CTGGGGAGGA ACAAATTAAA CAGCTTAGGC ATGCTTTAGA TTCTAAAGGT
AAAAGGGTTG GGGAGGAATG GTTTACCACA CCGAAGGTTG AGGCTGCATT AACAAGGTAC CATGAAGCAA ATGCCAAGGC
AACAGAACGA GTTTTGGAAA TTTTAAGGGA ACTCGCTACT GAATTGCATT ACAGTATAAA CATTCTTGTC TTTTCATCCA
CACTACTTGT TATTACCAAA GCTTTATTCG CTCATGCAAG TGAAGGGAGA AGAAGGAGAT GGGTTTTTCC AACACTTGCA
GATTCGAATG GGTTTGAGGA TGTAAAATCG TCGGACAAAA CCCATGGGAT GAAGATAGTT GGTTTATCAC CATATTGGAT
CCACATCGCG GAGGGTGTTG TGCGTAATGA TGTTGATATG GAATCATTAT TTCTTTTGAC AGGACCGAAT GGTGGTGGGA
AATCAAGTTT ACTTCGATCA ATTTGTGCTG CTGCACTACT TGGGATATGT GGACTCATGG TTCCTGCAGA ATCAGCCGTG
ATTCCTTATT TTGACTCCAT CACACTTCAT ATGAAGTCAT ATGATAGTCC AGCTGATAAA AAGAGTTCCT TTCAGGTGGA
AATGTCAGAA CTTCGATCCA TCATTGGCGG AACCACCAAA AGGAGCCTTG TACTTGTTGA TGAAATTTGC CGAGGAACAG
AAACTGCAAA AGGGACTTGT ATTGCTGGTA GCATCATTGA AACTCTAGAA AGAATTGGTT GTCTGGGTGT TGTGTCCACT
CACTTGCATG GAATATTTAC TTTGCCCCTA AACATCACAA GCACTGTGCG CAAAGCAATG GGCACAACGT CCATTGATGG
ACAAATAATG CCTACGTGGA AGCTGACAGA TGGGGTCTGT AAGGAAAGTC TTGCTTTTGA AACTGCCATT AGGGAAGGAA
TTCCTGAGCC TATTATCAGA AGAGCTGAAT ATCTTTATCA GTCAGTTTAT GCTGAGGAAA ATTTCCCAAA TGAAGACAAG
TTTTCTACTT GCAACAATTT TAATAATTTG AATACAACAC GTCTTCATTC TAAAAGGTTC TCATCAGGAG CTAATCAAAT
GGAAGTTTTA CGCCAGGAAG TTGAAAGAGC TGTCACTGGG ATATGCCAGG ATTATATATT GGAGCGGAAA AGCAAAAGGA
TTGCATTGGA GCTTCCTGAG ATAAAATGTC TCTTAATCGG TACAAGGGAG CTGCCACCTC CATCGGTTGT AGGTTCTTCA
TGCGTCTATG TGATTTTAAG GTCAGATAAA AAGCTCTACG TAGGAGAGAC AGATGATCTT GAGGGACGGG TTCGAAGACA
TAGATTGAAA GAAGGTATGC ATGAAGCATC ATTCCTTTAT TTCCTTGTCC CTGGAAAAAG CATGGCATGC GAATTTGAAT
CTCTGCTCAT CAACCAGCTT TCTAGTCAAG GCTTCCAACT GAGCAACACG TCAGATGGTA AACATAGGAA CTTTGGCACT
TCCAACATGT ATGCATAA

>Vigan.08G301400.01
MYRVVTRNVA VFLPRCRSLL HFSHSPFPIF ISCVPSRFLR INRCVKNVSG YMENKVSRGS SRTTKKPKVS KNGLDDKDLP
HILWWKERLQ MCKKFSTIQL IEKLEFSNLL GLDSKLKNGS VKEGTLNWEM LQFKSKFPRQ VLLCRVGEFY EAWGIDACVL
VEYAGLNPCG GLQSDCVPRA GCPVMNLRQT LDDLTQNGYS VCIVEEVQGP TQARSRKRRF ISGHAHPGNP YVYGLAAVDH
DLNFPEPMPV IGISYSARGY CINMVLETMK TFSSEDCLTE EAIVTKLRTC QYHHLFLHTS LKQDSCGTCK WGEFGEGGLL
WGECSSRHFE WFDGNPLSDL LIKVKELYGL GDEVNFRNAT VSSAHRARPL TLGTSTQIGA IQTEGIPSLL KVLLPLSCNG
LPVLYIRNLL LNPPSYEIAS KIQETCKLMS SLTCSIPEFT CVSSAKLVKL LEWREVNHME FCRIKNVVDE ILQMYRTLEL
NEILESLIAP TWATTGLEID FETLVAGCEV ASSKIGEIIS LDGGNDQKVN YFSLIPHEFF EDMESKWKGR IKRIHIDDVF
TAVQKAAEVL HLAVTEDFVP VVSRVKATIA PLGGPRGEIC YAREHEAVWF RGKRFTPNLW SGSPGEEQIK QLRHALDSKG
KRVGEEWFTT PKVEAALTRY HEANAKATER VLEILRELAT ELHYSINILV FSSTLLVITK ALFAHASEGR RRRWVFPTLA
DSNGFEDVKS SDKTHGMKIV GLSPYWIHIA EGVVRNDVDM ESLFLLTGPN GGGKSSLLRS ICAAALLGIC GLMVPAESAV
IPYFDSITLH MKSYDSPADK KSSFQVEMSE LRSIIGGTTK RSLVLVDEIC RGTETAKGTC IAGSIIETLE RIGCLGVVST
HLHGIFTLPL NITSTVRKAM GTTSIDGQIM PTWKLTDGVC KESLAFETAI REGIPEPIIR RAEYLYQSVY AEENFPNEDK
FSTCNNFNNL NTTRLHSKRF SSGANQMEVL RQEVERAVTG ICQDYILERK SKRIALELPE IKCLLIGTRE LPPPSVVGSS
CVYVILRSDK KLYVGETDDL EGRVRRHRLK EGMHEASFLY FLVPGKSMAC EFESLLINQL SSQGFQLSNT SDGKHRNFGT
SNMYA*