VIGGS:GBrowse

Vigan.08G301800.01

Basic Information:

Name:	Vigan.08G301800.01 Multiple alignment Variant Information
Position:	Chr08:38394765..38396947 (+ strand)
Length:	2183

Functional Information:

Description:	Similar to glycine cleavage system H protein 2, mitochondrial isoform 1. [XP_003556280.1, Glycine max]
GO:	Biological Process: glycine catabolic process (GO:0006546)
	Biological Process: glycine decarboxylation via glycine cleavage system (GO:0019464)
	Cellular Component: glycine cleavage complex (GO:0005960)
InterPro:	Glycine cleavage H-protein (IPR002930)
	2-oxo acid dehydrogenase, lipoyl-binding site (IPR003016)
	Single hybrid motif (IPR011053)
	Glycine cleavage H-protein, subgroup (IPR017453)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:29.81,12.40,40.77,12.68,209.37,98.79,82.20,74.72
Arabidopsis thaliana homolog:	AT2G35120.1

Automatic updates:

Name:	NM_001250152 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max glycine cleavage system H protein 2-like (LOC100305815), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001255478 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max glycine cleavage system H protein, mitochondrial-like (LOC100792708), mRNA; nuclear gene for mitochondrial product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:38394765..38394812 (+ strand)
Length:	48
Type:	five_prime_UTR

Position:	Chr08:38394813..38394891 (+ strand)
Length:	79
Type:	CDS

Position:	Chr08:38396060..38396319 (+ strand)
Length:	260
Type:	CDS

Position:	Chr08:38396543..38396668 (+ strand)
Length:	126
Type:	CDS

Position:	Chr08:38396669..38396947 (+ strand)
Length:	279
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G301800.01
ACCACAAAGC AAAAGTGTTG AACTCACAAA TACACAGAGA AGAGAGAAAT GGCTTGCAGG CAATTATGGG CTTCAAGGGC
TGCTTCTTAT CTCAGGATCT CTGTCTTCAA CAGAGGCTTT TCCAATGTTG TTAAAGATCT GAAGTATGCT GATTCCCATG
AGTGGGTCAA GGTTGATGGA AATTCTGCAA CCGTTGGCAT AACTGATCAT GCCCAAGATC ATTTGGGTGA TGTTGTGTAT
GTTGAGTTGC CTGAAGTGGG AGCCACCGTG ACACAAGGAG ACAGTTTTGG TGCAGTTGAA AGTGTGAAGG CAACTAGTGA
TATTAACTCT CCTGTTTCAG GAAAAGTGGT CGAAGTTAAT GAAGAGCTTA GTAGCTCTCC TGCTTTGGTA AACTCAAGCC
CTTATAAAGA TGGATGGATA ATTAAGGTTG AACTGTCCGA CAGTGGCGAA CTAAACAATT TGATGGATTC AGAAAAGTAT
TCCAAATTCT GTGAAGAAGA AGATTCACAT TAAGATCTTT CAGCACTCTT CCATGGTGTT GTACATCATG TTCATGTTTT
AATTGGGAAA GCTAAGAAGG GCTTGTTCCC TTTTCTACAT GTCATGTCTT TACTTTTCTA TTTTTATTTT TCCTGAAATT
CAGAATCAGT GAGATGATTT TTCACTCTTT GCAATGGAAA TATGAATTTG ATAATGTGGT AAATTCATGA TTAGTTTTCT
TTATTAAGGT ATATCAATTT TGTTAGTTGA ATGTAATAAT TGAGAAATAA GATGAGACAT TGGTTATCAA GA

[show][hide][copy]CDS

>Vigan.08G301800.01
ATGGCTTGCA GGCAATTATG GGCTTCAAGG GCTGCTTCTT ATCTCAGGAT CTCTGTCTTC AACAGAGGCT TTTCCAATGT
TGTTAAAGAT CTGAAGTATG CTGATTCCCA TGAGTGGGTC AAGGTTGATG GAAATTCTGC AACCGTTGGC ATAACTGATC
ATGCCCAAGA TCATTTGGGT GATGTTGTGT ATGTTGAGTT GCCTGAAGTG GGAGCCACCG TGACACAAGG AGACAGTTTT
GGTGCAGTTG AAAGTGTGAA GGCAACTAGT GATATTAACT CTCCTGTTTC AGGAAAAGTG GTCGAAGTTA ATGAAGAGCT
TAGTAGCTCT CCTGCTTTGG TAAACTCAAG CCCTTATAAA GATGGATGGA TAATTAAGGT TGAACTGTCC GACAGTGGCG
AACTAAACAA TTTGATGGAT TCAGAAAAGT ATTCCAAATT CTGTGAAGAA GAAGATTCAC ATTAA

[show][hide][copy]PROTEIN

>Vigan.08G301800.01
MACRQLWASR AASYLRISVF NRGFSNVVKD LKYADSHEWV KVDGNSATVG ITDHAQDHLG DVVYVELPEV GATVTQGDSF
GAVESVKATS DINSPVSGKV VEVNEELSSS PALVNSSPYK DGWIIKVELS DSGELNNLMD SEKYSKFCEE EDSH*