VIGGS:GBrowse

Vigan.08G304900.01

Basic Information:

Name:	Vigan.08G304900.01 Multiple alignment Variant Information
Position:	Chr08:38846633..38851623 (+ strand)
Length:	4991

Functional Information:

Description:	Similar to Uricase-2. [P53763, Phaseolus vulgaris]
GO:	Biological Process: purine nucleobase metabolic process (GO:0006144)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: urate oxidase activity (GO:0004846)
InterPro:	Uricase (IPR002042)
InterPro:	Uricase, conserved site (IPR019842)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:65.69,44.70,38.08,21.08,3981.74,161.85,602.52,33.50
Arabidopsis thaliana homolog:	AT2G26230.1

Automatic updates:

Name:	NM_001249019 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uricase-2 isozyme 2 (UR2), mRNA.
PubMed ID:	9245835 NCBI(pubmed)
	24302157 NCBI(pubmed)
	16593585 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001249762 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uricase-2 isozyme 1 (UR9), mRNA.
PubMed ID:	31165947 NCBI(pubmed)
	9245835 NCBI(pubmed)
	16667995 NCBI(pubmed)
	16593585 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001279099 NCBI(nuccore)
Organism:	Cicer arietinum
Description:	Cicer arietinum uricase-2 isozyme 1-like (LOC101500535), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:38846633..38846816 (+ strand)
Length:	184
Type:	five_prime_UTR

Position:	Chr08:38846817..38847161 (+ strand)
Length:	345
Type:	CDS

Position:	Chr08:38847798..38847890 (+ strand)
Length:	93
Type:	CDS

Position:	Chr08:38848374..38848449 (+ strand)
Length:	76
Type:	CDS

Position:	Chr08:38848821..38848930 (+ strand)
Length:	110
Type:	CDS

Position:	Chr08:38849159..38849250 (+ strand)
Length:	92
Type:	CDS

Position:	Chr08:38849569..38849742 (+ strand)
Length:	174
Type:	CDS

Position:	Chr08:38849870..38849960 (+ strand)
Length:	91
Type:	CDS

Position:	Chr08:38851230..38851313 (+ strand)
Length:	84
Type:	CDS

Position:	Chr08:38851314..38851623 (+ strand)
Length:	310
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G304900.01
GAAAATGTTA GTCTCTTCTC TGTCTTAATT TTATAACTTT AACCAATTTT AATTAATCGA AGAAATTAAA TCCTGGTTAA
GTCAAGAGCA ATTTGTTGTC AGAAAATTGA AAATTTTGGA ACTTGTTTGG ACGATGATGT AACGCGCACA CAGAGTTAAT
GGTAAATCTG TGAAACAGGC AAAGATGCCA TTGTCCGCAC TTGAAACACG CGCGGGTATA AATAGAGCGA AACTCGAAAC
CGTAAAATCA CATCTTACTC ACTCTTTCAC TTTACTTAAA AGGGAAAGAA AAGAACTGAA CAACGTAAGA GCGTTCCAAA
ACATGGCGCA GGAAGTTGTG GAGGGGTTCA AGTTCGAGCA GAGGCACGGA AAAGAGCGCG TGAGAGTTGC GCGCGTGTGG
AAGACGCCCC AGGGTCGTCA CTTCGTTGTG GAGTGGCGCG TGGGTATTAG TCTCTTCTCT GATTGCGTCA ATTCCTATCT
CCGCGATGAT AACTCTGACA TAGTTGCCAC TGATACCATG AAAAACACGG TGTATGCGAA AGCAAAGGAA TGCTCGGACA
TACTTTCTGT CGAGGACTTT GCTATTCTAC TTGCCAAGCA CTTTGTATCA TTTTACCAAA AGGTTACTGG TGCTATTGTG
AATATTGTGG AAAAACCATG GGAGCGTGTC ATTGTGGATG GTCAACCTCA TGAACATGGT TTCAAACTTG GATCTGAGAA
GCATACAGCA GAGGCAATAG TACAGAAGTC TGGTTCACTA CAACTGACTT CTGGTATTGA AGGATTGTCG GTGTTGAAAA
CAACCCAGTC TGGTTTTGTG AATTTCATAA GAGACAAGTA CACAGCACTT CCTGATACCC GTGATAGGAT TTTGGCAACA
GAAGTAACTG CTCTGTGGAG GTATTCATAC GATTCGCTAT ACACCCTCCC TCAGAAGCCA CTTTACTTCA CAGACAAGTA
TCTGGAAGTG AAAACAGTTC TGGCTGACAC ATTTTTTGGG CCACCAAATA GGGGAGTCTA TAGCCCTTCT GTTCAAAACA
CACTCTACCT GATGGCGAAG GCCACACTGA ACAGATTTCC TGACATTGCT TATGTCCATC TAAAGATGCC AAATCTTCAT
TTCTTACCAG TCAACATCTC AAACAAGGAT GGTCCAATTG TGAAGTTTGA GGATGATGTG TATTTACCAA CGGATGAGCC
TCATGGCTCA ATTCAAGCAA GCTTGAGCCG TCTTTGGTCG AAGCTGTAGA AACTGCAGAA GCTATTTGTG GTGCTCATCC
CTTCTTGTGG ATTTTCCAGT GCAGCCTAAA CAAGCAAACC TGGCCTCAGT GATACTGCTT TCTTTCCATA TTGATGCGTG
TGTCATGTAG TTCTGGTTTT TGTTATCTTT GTATTTTGTT TAATGGAGAA ACTAATATGC ATGAATAACT TCCACAAGGG
ATATTCTGTA GGTTCCAATA AATTTCCTAG TGACCTTTAT CAATAAAATG TTCTTATTAT GAGGTTGATG CAATGCTTCT
TTATTCTCAT GCATGCATTG TTTATAGTAA AAAAATTTG

[show][hide][copy]CDS

>Vigan.08G304900.01
ATGCCATTGT CCGCACTTGA AACACGCGCG GGTATAAATA GAGCGAAACT CGAAACCGTA AAATCACATC TTACTCACTC
TTTCACTTTA CTTAAAAGGG AAAGAAAAGA ACTGAACAAC GTAAGAGCGT TCCAAAACAT GGCGCAGGAA GTTGTGGAGG
GGTTCAAGTT CGAGCAGAGG CACGGAAAAG AGCGCGTGAG AGTTGCGCGC GTGTGGAAGA CGCCCCAGGG TCGTCACTTC
GTTGTGGAGT GGCGCGTGGG TATTAGTCTC TTCTCTGATT GCGTCAATTC CTATCTCCGC GATGATAACT CTGACATAGT
TGCCACTGAT ACCATGAAAA ACACGGTGTA TGCGAAAGCA AAGGAATGCT CGGACATACT TTCTGTCGAG GACTTTGCTA
TTCTACTTGC CAAGCACTTT GTATCATTTT ACCAAAAGGT TACTGGTGCT ATTGTGAATA TTGTGGAAAA ACCATGGGAG
CGTGTCATTG TGGATGGTCA ACCTCATGAA CATGGTTTCA AACTTGGATC TGAGAAGCAT ACAGCAGAGG CAATAGTACA
GAAGTCTGGT TCACTACAAC TGACTTCTGG TATTGAAGGA TTGTCGGTGT TGAAAACAAC CCAGTCTGGT TTTGTGAATT
TCATAAGAGA CAAGTACACA GCACTTCCTG ATACCCGTGA TAGGATTTTG GCAACAGAAG TAACTGCTCT GTGGAGGTAT
TCATACGATT CGCTATACAC CCTCCCTCAG AAGCCACTTT ACTTCACAGA CAAGTATCTG GAAGTGAAAA CAGTTCTGGC
TGACACATTT TTTGGGCCAC CAAATAGGGG AGTCTATAGC CCTTCTGTTC AAAACACACT CTACCTGATG GCGAAGGCCA
CACTGAACAG ATTTCCTGAC ATTGCTTATG TCCATCTAAA GATGCCAAAT CTTCATTTCT TACCAGTCAA CATCTCAAAC
AAGGATGGTC CAATTGTGAA GTTTGAGGAT GATGTGTATT TACCAACGGA TGAGCCTCAT GGCTCAATTC AAGCAAGCTT
GAGCCGTCTT TGGTCGAAGC TGTAG

[show][hide][copy]PROTEIN

>Vigan.08G304900.01
MPLSALETRA GINRAKLETV KSHLTHSFTL LKRERKELNN VRAFQNMAQE VVEGFKFEQR HGKERVRVAR VWKTPQGRHF
VVEWRVGISL FSDCVNSYLR DDNSDIVATD TMKNTVYAKA KECSDILSVE DFAILLAKHF VSFYQKVTGA IVNIVEKPWE
RVIVDGQPHE HGFKLGSEKH TAEAIVQKSG SLQLTSGIEG LSVLKTTQSG FVNFIRDKYT ALPDTRDRIL ATEVTALWRY
SYDSLYTLPQ KPLYFTDKYL EVKTVLADTF FGPPNRGVYS PSVQNTLYLM AKATLNRFPD IAYVHLKMPN LHFLPVNISN
KDGPIVKFED DVYLPTDEPH GSIQASLSRL WSKL*