GBrowse Details

Vigan.08G306100.01

Basic Information:
Name: Vigan.08G306100.01
Multiple alignment
Variant Information
Position: Chr08:39157574..39167305 (+ strand)
Length: 9732
Functional Information:
Description: Similar to AMMECR1 family. [XP_007010426.1, Theobroma cacao]
InterPro: AMMECR1 domain (IPR002733)
AMMECR1 (IPR023473)
AMMECR1, N-terminal (IPR027485)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:95.34,80.48,55.92,26.51,35.65,42.65,45.74,36.39
Arabidopsis thaliana homolog: AT2G38710.1
Automatic updates:
Name: NM_001248101 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max AMMECR1 domain-containing protein (LOC100305669), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:39157574..39157748 (+ strand)
Length: 175
Type: five_prime_UTR
Position: Chr08:39157749..39157852 (+ strand)
Length: 104
Type: CDS
Position: Chr08:39158524..39158643 (+ strand)
Length: 120
Type: CDS
Position: Chr08:39158790..39158904 (+ strand)
Length: 115
Type: CDS
Position: Chr08:39161638..39161731 (+ strand)
Length: 94
Type: CDS
Position: Chr08:39166788..39166990 (+ strand)
Length: 203
Type: CDS
Position: Chr08:39166991..39167305 (+ strand)
Length: 315
Type: three_prime_UTR


>Vigan.08G306100.01
ATTTAAAGTG CTGGTTGCTT GCAAGCAAGA AGCTGGGAGA GAGAAAAAGA ACCTTCTTTC CTTCTCTCTG TTAAGTTTAT
TTCATCCAAA CCTAAAATCC CCGACAACCA CCGATTACTG ATTTCAATTA CATAATAACG AATCAAGAAG ATCCTTTTCG
GAGAAATACA CAAAAATGGT GTCGGCGAAC CAGGAAATGG TTGTTTACTG CTTTGACACC CTCGTCGCTC ACTACAACAA
CCAGGAACCT CCTCCTCCGG CCTTCGATCA GGCTCAGCAC CCATTGTTTG TTACATGGAA GAAAGTGGTG AATGGAGGAG
ATCCTCGACT TCGAGGATGC ATTGGAACTC TGGAAGCACG CAGCTTGATC AGTGGGCTCA AAGATTATGC ACTGACCAGT
GCCCTCAGGG ACAGAAGGTT TCCACCCATA CAGGCTAATG AGCTTCCGTT TTTGGAGTGT ACAGTGTCTA TTCTTACTGA
CTATGAAACT GCTAACAATT ATCTAGATTG GGAGATAGAA AAGCATGGTA TAATTATTGA ATTTTCTGAT CCTGTGTATA
GCACAAGGCG TAGTGCTACA TACCTGCCTG AAGTGGCAGC CAATGAAGGT TGGACAAAAA TAGAGGCCAT TGATTCTTTG
ATACGTAAAT CAGGATACAA TGGTCCTATA ACCGATGAAC TTAGGATGCA ATTACAGCTA ACCAGATACC AAAGCACCTT
ATTTACCATG CACTATAGTG AATACGTCTC CTATGTGAAG GAGAGAAGAG GTGAAGCTCC TATTCTTGCA GCTAAATCAC
CTCACTACTA AATTCTCCAG CCAAACTTTC TAAAGGCTGC ATATAATATA TTTGCTGAAA AAATAATTCT ATTTATCAAT
AGAGTTAAAA AAATAAAAAA GAGAAAGAAC CCCACTTGCA AAGGGTTGGA ACCAATGCTT GTCTAACCCT AACTACTGAA
GTGTTGATGC AACTTTTCTA TACTCTTCAA ATTTGTGTGC TTTTAACTCA TTTCATGTGA CTTAATTCAG CAGTTTATGA
AAGTTGTGTA CGGTTGAACT GTTTTCTATC AATCTTATTG ATAACAGGAA CTAGTTAGTT TGTTTGAGCA ATTGACTTAA
TTCTGT

>Vigan.08G306100.01
ATGGTGTCGG CGAACCAGGA AATGGTTGTT TACTGCTTTG ACACCCTCGT CGCTCACTAC AACAACCAGG AACCTCCTCC
TCCGGCCTTC GATCAGGCTC AGCACCCATT GTTTGTTACA TGGAAGAAAG TGGTGAATGG AGGAGATCCT CGACTTCGAG
GATGCATTGG AACTCTGGAA GCACGCAGCT TGATCAGTGG GCTCAAAGAT TATGCACTGA CCAGTGCCCT CAGGGACAGA
AGGTTTCCAC CCATACAGGC TAATGAGCTT CCGTTTTTGG AGTGTACAGT GTCTATTCTT ACTGACTATG AAACTGCTAA
CAATTATCTA GATTGGGAGA TAGAAAAGCA TGGTATAATT ATTGAATTTT CTGATCCTGT GTATAGCACA AGGCGTAGTG
CTACATACCT GCCTGAAGTG GCAGCCAATG AAGGTTGGAC AAAAATAGAG GCCATTGATT CTTTGATACG TAAATCAGGA
TACAATGGTC CTATAACCGA TGAACTTAGG ATGCAATTAC AGCTAACCAG ATACCAAAGC ACCTTATTTA CCATGCACTA
TAGTGAATAC GTCTCCTATG TGAAGGAGAG AAGAGGTGAA GCTCCTATTC TTGCAGCTAA ATCACCTCAC TACTAA

>Vigan.08G306100.01
MVSANQEMVV YCFDTLVAHY NNQEPPPPAF DQAQHPLFVT WKKVVNGGDP RLRGCIGTLE ARSLISGLKD YALTSALRDR
RFPPIQANEL PFLECTVSIL TDYETANNYL DWEIEKHGII IEFSDPVYST RRSATYLPEV AANEGWTKIE AIDSLIRKSG
YNGPITDELR MQLQLTRYQS TLFTMHYSEY VSYVKERRGE APILAAKSPH Y*