GBrowse Details

Vigan.08G307500.01

Basic Information:
Name: Vigan.08G307500.01
Multiple alignment
Variant Information
Position: Chr08:39388270..39392764 (- strand)
Length: 4495
Functional Information:
Description: Similar to Uncharacterized protein. [I1NEH3, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro: Thiolase (IPR002155)
Thiolase-like, subgroup (IPR016038)
Thiolase-like (IPR016039)
Thiolase, active site (IPR020610)
Thiolase, conserved site (IPR020613)
Thiolase, acyl-enzyme intermediate active site (IPR020615)
Thiolase, N-terminal (IPR020616)
Thiolase, C-terminal (IPR020617)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:297.93,81.03,164.75,100.70,88.69,91.08,91.73,58.22
Arabidopsis thaliana homolog: AT1G04710.1, AT2G33150.1, AT5G48880.2
Automatic updates:
Name: NM_001251546 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal 3-ketoacyl-CoA thiolase (LOC100170734), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:39388270..39388505 (- strand)
Length: 236
Type: three_prime_UTR
Position: Chr08:39388506..39388612 (- strand)
Length: 107
Type: CDS
Position: Chr08:39388685..39388768 (- strand)
Length: 84
Type: CDS
Position: Chr08:39389035..39389143 (- strand)
Length: 109
Type: CDS
Position: Chr08:39389231..39389354 (- strand)
Length: 124
Type: CDS
Position: Chr08:39390052..39390148 (- strand)
Length: 97
Type: CDS
Position: Chr08:39390235..39390367 (- strand)
Length: 133
Type: CDS
Position: Chr08:39390447..39390524 (- strand)
Length: 78
Type: CDS
Position: Chr08:39390616..39390723 (- strand)
Length: 108
Type: CDS
Position: Chr08:39390849..39390916 (- strand)
Length: 68
Type: CDS
Position: Chr08:39391003..39391101 (- strand)
Length: 99
Type: CDS
Position: Chr08:39391187..39391313 (- strand)
Length: 127
Type: CDS
Position: Chr08:39391512..39391596 (- strand)
Length: 85
Type: CDS
Position: Chr08:39391706..39391782 (- strand)
Length: 77
Type: CDS
Position: Chr08:39392606..39392695 (- strand)
Length: 90
Type: CDS
Position: Chr08:39392696..39392764 (- strand)
Length: 69
Type: five_prime_UTR


>Vigan.08G307500.01
CTGAATCTCA CCATCTATTC TTCCTTTCTC TGCGAATTCG CTTCAATTTC CAAATCACGA ACTCAAAAGA TGGAGAAAGC
GATCAACAGA CAGAAGATTT TGCTTCATCA TCTCAACCCT TCATCATCTA CCCACGCAAT CGAATCATCC TCTCTCTCTG
CTTCAGCATG TGCGGCGGGG GATAGTGCTG CTTATCATAG GACATCTACA TTTGGGGACG ATGTTGTAAT CGTGGCTGCT
TATCGGACTG CTCTTTGCAA ATCTAAGCGT GGTGGTTTCA AAGACACTCA TGCTGATGAT CTACTGGCTC CTGTTTTAAA
GGCTGTAATT GAGAGAACCA ATGTCAACCC AAGTGAAGTT GGGGATATTG TTGTGGGTAC TGTATTGGCT CCTGGATCTC
AAAGAGCTAG TGAATGCCGA ATGGCTGCAT TTTATGCTGG TTTTCCTGAA ACTGTACCTG TTAGGACTGT TAATAGGCAA
TGTTCGTCTG GGCTCCAGGC CGTTGCTGAT GTAGCTGCTG CTATAAGGGC TGGATTCTAT GATATTGGTA TTGGTGCTGG
TTTGGAATCT ATGACAGCGA ATCCAATGGC ATGGGAAGGA TCAGTTAATC CTAAAGTAAA AATATTTGAA CAAGCACAAA
ACTGCCTTCT TCCAATGGGT ATTACCTCTG AAAATGTTGC ACATCGCTTT GGTGTTTCAA GGAAGGAACA AGATCTGGCT
GCAGTTGAGT CTCATAGACG AGCTGCTGCA GCTACTGCTT CTGGTAGATT TAAAGATGAA ATTATCCCAG TTTCCACCAA
GATTGTGGAC CCAAAATCTG GTGATGAGAA ACCTGTCACC ATTTCTGTTG ATGATGGAAT TCGACCTGGG ACAACAGTGT
CTGATCTAGG GAGGCTCAAA CCTGTCTTCA AGAAAGATGG AACCACTACT GCTGGTAATT CTAGCCAGGT GAGTGATGGT
GCTGCAGCTG TTCTGCTTAT GAAAAGAAGT GTTGCACTGC AAAAGGGCCT ACCCATTCTT GGTGTATTCA GGACTTTCAC
AGCAGTTGGT GTTGATCCTG CCATCATGGG TGTGGGCCCT GCTGCTGCAA TTCCTGTTGC TGTTAAGGCT GCAGGTCTAG
AGCTTGACGA TATTGATCTT TTTGAAATAA ATGAGGCATT TGCTTCCCAG TTCGTGTATT GCCGAAACAA GCTAGGGCTT
GATCCAGAAA AGATCAATGT TAATGGAGGT GCAATGGCAA TTGGGCATCC TCTAGGTGCA ACAGGTGCTC GATGTGTTGC
TACACTGTTG CATGAAATGA AGAAACGTGG CAGGGACTGT AGATTTGGAG TTATATCTAT GTGCATAGGT ACTGGAATGG
GAGCAGCTGC TGTTTTTGAG AGTGGTGATT GTGCTGATCA GCTATGCAAT GCCCGAAAAG TGGATGACCT TCTTCTATCC
AAGGATGCTC GCTAGAAATT ACAATCAAGA GGTCAACCAC TGTTCAACAA TTTGAACCTT TCTATTCATA AGACCAGAAT
TATTTTGTGA TGTGTTTTCT TTAATTATCA ACACTTACCT TTTTTTTTCT CTCCTCACAC AAGTTATTAC ATCTTTTTAC
TCTCTCTTTT CTATACACTT TATCCACCCT AATTATGATG AACACCCTGC TTTGCATAAC CAGAAAAATA AAATTATAGT
TCACATGAAA A

>Vigan.08G307500.01
ATGGAGAAAG CGATCAACAG ACAGAAGATT TTGCTTCATC ATCTCAACCC TTCATCATCT ACCCACGCAA TCGAATCATC
CTCTCTCTCT GCTTCAGCAT GTGCGGCGGG GGATAGTGCT GCTTATCATA GGACATCTAC ATTTGGGGAC GATGTTGTAA
TCGTGGCTGC TTATCGGACT GCTCTTTGCA AATCTAAGCG TGGTGGTTTC AAAGACACTC ATGCTGATGA TCTACTGGCT
CCTGTTTTAA AGGCTGTAAT TGAGAGAACC AATGTCAACC CAAGTGAAGT TGGGGATATT GTTGTGGGTA CTGTATTGGC
TCCTGGATCT CAAAGAGCTA GTGAATGCCG AATGGCTGCA TTTTATGCTG GTTTTCCTGA AACTGTACCT GTTAGGACTG
TTAATAGGCA ATGTTCGTCT GGGCTCCAGG CCGTTGCTGA TGTAGCTGCT GCTATAAGGG CTGGATTCTA TGATATTGGT
ATTGGTGCTG GTTTGGAATC TATGACAGCG AATCCAATGG CATGGGAAGG ATCAGTTAAT CCTAAAGTAA AAATATTTGA
ACAAGCACAA AACTGCCTTC TTCCAATGGG TATTACCTCT GAAAATGTTG CACATCGCTT TGGTGTTTCA AGGAAGGAAC
AAGATCTGGC TGCAGTTGAG TCTCATAGAC GAGCTGCTGC AGCTACTGCT TCTGGTAGAT TTAAAGATGA AATTATCCCA
GTTTCCACCA AGATTGTGGA CCCAAAATCT GGTGATGAGA AACCTGTCAC CATTTCTGTT GATGATGGAA TTCGACCTGG
GACAACAGTG TCTGATCTAG GGAGGCTCAA ACCTGTCTTC AAGAAAGATG GAACCACTAC TGCTGGTAAT TCTAGCCAGG
TGAGTGATGG TGCTGCAGCT GTTCTGCTTA TGAAAAGAAG TGTTGCACTG CAAAAGGGCC TACCCATTCT TGGTGTATTC
AGGACTTTCA CAGCAGTTGG TGTTGATCCT GCCATCATGG GTGTGGGCCC TGCTGCTGCA ATTCCTGTTG CTGTTAAGGC
TGCAGGTCTA GAGCTTGACG ATATTGATCT TTTTGAAATA AATGAGGCAT TTGCTTCCCA GTTCGTGTAT TGCCGAAACA
AGCTAGGGCT TGATCCAGAA AAGATCAATG TTAATGGAGG TGCAATGGCA ATTGGGCATC CTCTAGGTGC AACAGGTGCT
CGATGTGTTG CTACACTGTT GCATGAAATG AAGAAACGTG GCAGGGACTG TAGATTTGGA GTTATATCTA TGTGCATAGG
TACTGGAATG GGAGCAGCTG CTGTTTTTGA GAGTGGTGAT TGTGCTGATC AGCTATGCAA TGCCCGAAAA GTGGATGACC
TTCTTCTATC CAAGGATGCT CGCTAG

>Vigan.08G307500.01
MEKAINRQKI LLHHLNPSSS THAIESSSLS ASACAAGDSA AYHRTSTFGD DVVIVAAYRT ALCKSKRGGF KDTHADDLLA
PVLKAVIERT NVNPSEVGDI VVGTVLAPGS QRASECRMAA FYAGFPETVP VRTVNRQCSS GLQAVADVAA AIRAGFYDIG
IGAGLESMTA NPMAWEGSVN PKVKIFEQAQ NCLLPMGITS ENVAHRFGVS RKEQDLAAVE SHRRAAAATA SGRFKDEIIP
VSTKIVDPKS GDEKPVTISV DDGIRPGTTV SDLGRLKPVF KKDGTTTAGN SSQVSDGAAA VLLMKRSVAL QKGLPILGVF
RTFTAVGVDP AIMGVGPAAA IPVAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDPE KINVNGGAMA IGHPLGATGA
RCVATLLHEM KKRGRDCRFG VISMCIGTGM GAAAVFESGD CADQLCNARK VDDLLLSKDA R*