GBrowse Details

Vigan.08G308400.01

Basic Information:
Name: Vigan.08G308400.01
Multiple alignment
Variant Information
Position: Chr08:39577987..39584555 (+ strand)
Length: 6569
Functional Information:
Description: Similar to Uncharacterized protein. [I1LAK5, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Uncharacterised protein family UPF0016 (IPR001727)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.70,16.33,20.67,33.09,9.46,9.26,8.06,12.27
Arabidopsis thaliana homolog: AT4G13590.1
Automatic updates:
Name: NM_001354893 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative Ca2+/H+ antiporter (LOC100785052), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:39577987..39578125 (+ strand)
Length: 139
Type: five_prime_UTR
Position: Chr08:39578126..39578246 (+ strand)
Length: 121
Type: CDS
Position: Chr08:39578790..39578952 (+ strand)
Length: 163
Type: CDS
Position: Chr08:39579657..39579840 (+ strand)
Length: 184
Type: CDS
Position: Chr08:39580784..39580831 (+ strand)
Length: 48
Type: CDS
Position: Chr08:39581214..39581310 (+ strand)
Length: 97
Type: CDS
Position: Chr08:39582788..39582951 (+ strand)
Length: 164
Type: CDS
Position: Chr08:39583144..39583209 (+ strand)
Length: 66
Type: CDS
Position: Chr08:39583633..39583683 (+ strand)
Length: 51
Type: CDS
Position: Chr08:39583783..39583887 (+ strand)
Length: 105
Type: CDS
Position: Chr08:39583967..39584032 (+ strand)
Length: 66
Type: CDS
Position: Chr08:39584033..39584555 (+ strand)
Length: 523
Type: three_prime_UTR


>Vigan.08G308400.01
GTTGCATTGT ATACGTGGCA ACCTTCAAGA ACTCTCTTTC ATGTACCAGC CTTAGCTCAA CTTGATTCCT TCAAAGTTCG
AGTTTGACAG AACCCACTCA ACCCAGAAAT GAAATTGTAG AACCTCTTTC ACAGAAAACA TGAGAGGGTT AGGACCTCAT
GCCCCTTTGG TTTCAAGGGG AAAGCCTCCT CCTTCCTTGG TAGTGGTGGA TGCGTTGCCT TCCTCTTCTC ATTTCACTAG
AACCACCACG CTATACCCAT TAAGACGCAG ACAGAAATCA GGGCTGAGCT TTGCCCGTGG CACAATTCGA GCCCTAGCAT
CCAATATTAG TGGTGTTGAA CCAGGAGATT ATGGAAGCAG TAATGAGAAA GATGGTCACA ATGTCTTTGA AAAGAATGCC
ATAGACGACA GTTCTTCTAA AGTTGTGAAG CCTCCTAATC AAATCCCTTA TCTTCTCTCT ATAGCTTTTG TGCTGTTGGG
GTGTGCTTTT GTCTTTTCAC TAATTGCCTT TGTCAAAGGA GGACCTTCAT CAGTTTTAGC AGCAGTTGCA AAATCAGGAT
TCACTGCTGC ATTTACATTG ATATTTGTTT CTGAGATTGG AGACAAGACA TTCTTTATTG CTGCACTCTT GGCAATGCAA
TTTGAAAAGG GATTGGTCCT ATTGGGTTCA ATGGGTGCTC TTGGACTCAT GTCAATCCTA TCTGTTGTAA TTGGCCGAAT
CTTTCAATCA GTGCCTGCTC AGTTTCAGAC AACCGTGCCA ATTGGAGAAT ATGCAGCAGT AACCCTTCTT TTGTTTTTCG
GCCTAAAAGC AATAAAAGAT GCATGGGATC TTCCATCTGA TGTGGTTAAG AAAGGTGATA GCAGCAGTCC CGAACTTGAT
GAACTTGCTG AAGCAGAGGA GCTTGTGAAA GAGAAGGTAT CAAAAAAACT TTCAAATCCT CTAGAGATTA TATGGAAGTC
GTTCAGCCTC GTATTTTTTG CTGAATGGGG AGATCGCTCT ATGCTTGCAA CTATTGCACT AGGAGCTGCT CAGTCTCCTT
GGGGTGTGGC AAGTGGAGCC ATTGCTGGAC ACCTAGTCGC AACAACTATT GCCATTCTTG GAGGAGCCTT CCTTGCTAAC
TACATTTCTG AAAAACTGGT TGGCTACGTG GGTGGAGGGC TGTTTCTAAT TTTTGCTGTG GCCACCTTTT TTGGGGTTTT
CTGATTCATT GCTTTTCGGT GTGTAATCTA TCATTCATGG AGTTGGAAGG AATAAGACAT ACTCATAACA CAGAAAGATT
GCTGAGAGAA CTGAGAAAAG CTCATATTTT AACTTTGTTA AATTTCTTTA GCAGACATTA GGAGCAAATT GCTGACATTG
GTAGAGAATA AGAAGCATGA AATGTGCCAT TAGAGTGAGG TACGAAGAGA AACTTGTGCA ATTCTTTCTG GAGACTACCT
TTTGTGGGGT TGTGCTTATT TGTTGTATTA ATAAAAATAG TAGGAGTGTG CTGATTTGTT GTATTAATAA AACTACATCA
CATTTACTTT TATTTTTTTG AATTACATCC ACCAAGGAAA GCATATTGGT GGTCGAAAGA GGAGTAAGAT ATTAATATTT
AAGTTTACCA TATGTTTTTT GTTTCCTCTT CTAAGCTCAA GAAGGATGAG GAGGGATTTT ATAAGTCATA ATTAATTATT
ACATGGTGAA TCATGTGGTT AATTTGTTGC CACTTAATAA ATGAAGC

>Vigan.08G308400.01
ATGAGAGGGT TAGGACCTCA TGCCCCTTTG GTTTCAAGGG GAAAGCCTCC TCCTTCCTTG GTAGTGGTGG ATGCGTTGCC
TTCCTCTTCT CATTTCACTA GAACCACCAC GCTATACCCA TTAAGACGCA GACAGAAATC AGGGCTGAGC TTTGCCCGTG
GCACAATTCG AGCCCTAGCA TCCAATATTA GTGGTGTTGA ACCAGGAGAT TATGGAAGCA GTAATGAGAA AGATGGTCAC
AATGTCTTTG AAAAGAATGC CATAGACGAC AGTTCTTCTA AAGTTGTGAA GCCTCCTAAT CAAATCCCTT ATCTTCTCTC
TATAGCTTTT GTGCTGTTGG GGTGTGCTTT TGTCTTTTCA CTAATTGCCT TTGTCAAAGG AGGACCTTCA TCAGTTTTAG
CAGCAGTTGC AAAATCAGGA TTCACTGCTG CATTTACATT GATATTTGTT TCTGAGATTG GAGACAAGAC ATTCTTTATT
GCTGCACTCT TGGCAATGCA ATTTGAAAAG GGATTGGTCC TATTGGGTTC AATGGGTGCT CTTGGACTCA TGTCAATCCT
ATCTGTTGTA ATTGGCCGAA TCTTTCAATC AGTGCCTGCT CAGTTTCAGA CAACCGTGCC AATTGGAGAA TATGCAGCAG
TAACCCTTCT TTTGTTTTTC GGCCTAAAAG CAATAAAAGA TGCATGGGAT CTTCCATCTG ATGTGGTTAA GAAAGGTGAT
AGCAGCAGTC CCGAACTTGA TGAACTTGCT GAAGCAGAGG AGCTTGTGAA AGAGAAGGTA TCAAAAAAAC TTTCAAATCC
TCTAGAGATT ATATGGAAGT CGTTCAGCCT CGTATTTTTT GCTGAATGGG GAGATCGCTC TATGCTTGCA ACTATTGCAC
TAGGAGCTGC TCAGTCTCCT TGGGGTGTGG CAAGTGGAGC CATTGCTGGA CACCTAGTCG CAACAACTAT TGCCATTCTT
GGAGGAGCCT TCCTTGCTAA CTACATTTCT GAAAAACTGG TTGGCTACGT GGGTGGAGGG CTGTTTCTAA TTTTTGCTGT
GGCCACCTTT TTTGGGGTTT TCTGA

>Vigan.08G308400.01
MRGLGPHAPL VSRGKPPPSL VVVDALPSSS HFTRTTTLYP LRRRQKSGLS FARGTIRALA SNISGVEPGD YGSSNEKDGH
NVFEKNAIDD SSSKVVKPPN QIPYLLSIAF VLLGCAFVFS LIAFVKGGPS SVLAAVAKSG FTAAFTLIFV SEIGDKTFFI
AALLAMQFEK GLVLLGSMGA LGLMSILSVV IGRIFQSVPA QFQTTVPIGE YAAVTLLLFF GLKAIKDAWD LPSDVVKKGD
SSSPELDELA EAEELVKEKV SKKLSNPLEI IWKSFSLVFF AEWGDRSMLA TIALGAAQSP WGVASGAIAG HLVATTIAIL
GGAFLANYIS EKLVGYVGGG LFLIFAVATF FGVF*