GBrowse Details

Vigan.08G309400.01

Basic Information:
Name: Vigan.08G309400.01
Multiple alignment
Variant Information
Position: Chr08:39663914..39667647 (+ strand)
Length: 3734
Functional Information:
Description: Similar to NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B. [XP_003535969.1, Glycine max]
InterPro: GRIM-19 (IPR009346)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:186.00,100.89,73.65,51.39,103.83,207.41,70.09,54.15
Arabidopsis thaliana homolog: AT1G04630.1
Automatic updates:
Name: NM_001361195 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GRIM-19-like protein (LOC100812908), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:39663914..39663989 (+ strand)
Length: 76
Type: five_prime_UTR
Position: Chr08:39663990..39664441 (+ strand)
Length: 452
Type: CDS
Position: Chr08:39666915..39666986 (+ strand)
Length: 72
Type: CDS
Position: Chr08:39667083..39667227 (+ strand)
Length: 145
Type: CDS
Position: Chr08:39667228..39667647 (+ strand)
Length: 420
Type: three_prime_UTR


>Vigan.08G309400.01
AAGCAACAAG ATTTAAAATG AAAAATTAGA AAATAAAATT AGAATTTTGA AGTATATAAG AGTGCAGATT GAAATTATGG
AAGTGCAGAT AGAAGCTTGG ACCTATTGTA CGTTGTGGGC TGGGATAAGG TCCAATAAAA CGGATTGCTT TGTAGGACTA
TCCACTTCAG GTTCCGACTC GAATGTAAAA CCCGAATCTC TTTCGGTTCC CCTTTACACA CTGAAACAGA GAGAAGAGAT
TCGCGTGCTT GATTGTTATT ACTGTTTCTG TATTCCACAC AACGAGTGTC GGAAGAGAGG AGATCGGAAA AAGATGACGG
AGGCCTATAT AAGGAACAAG CCAGGCATGG CGAGCGTGAA GGACATGCCG GTTCTCCAGG ACGGTCCACC GCCGGGCGGG
TTCGCACCGG TCCGGTTCGC TCGCCGCATC CCTAACAAGG GCCCAAGCGC TATCGCCATA TTCCTCGCTA CATTCGGAAC
ATTCTCTTGG GGCATGTACC AGGTCGGCCA GGGCAACAAG ATCAGAAGGG CACTGAAGGA AGAAAAATAT GCTGCCCGCC
GATCCATACT GCCTGTGCTA CAGGCTGAAG AGGATGAGAG ATTTGTTAGA GAGTGGCATA AATACCTCGC GTATGAGGCA
GAAGTGATGA AGGATGTGCC TGGTTGGAAG GTTGGTGAAA GTGTGTACAA TTCTGGGAGA TGGGTGCCCC CAGCCAGCGG
TGAGTTGCGT CCTGATATCT GGTGATGCTT TTTCAGCCAT CTCCATCCGA ATTTGTGCTG CTTCTTGCAT GTTCGTTACA
TTCTGGTACT TTTGTCCAGT CTCTAAAATA AATTTGTATC TGGAATATTT GTGACTTTTT TGCGAAATTT TAAAACAAGA
ATGCATTTTG TATTTGTCCT TCATGTTGGC AATAACACTT ATCTCCGATG TATGTCAGTA TATAAATGCA CATTCTTGGC
ATTACAAATT GTGCGCTTTT TTCGTAACTT GGGGAAAGAA CAAGTCTCAA ACCCAAAAAG AGAGAAATGG TGAAATTTTT
AACAGTTTTT AAATAGCTTT GACGATGATG TAGGGGACTA GAGAATACTC CATCTTAGCC TGATTTCTAG AACAATAAAA
CGCAAACTTA ATTGGAGGAA AGAAGGGTTA ATTCCACCAT TTCTC

>Vigan.08G309400.01
ATGGAAGTGC AGATAGAAGC TTGGACCTAT TGTACGTTGT GGGCTGGGAT AAGGTCCAAT AAAACGGATT GCTTTGTAGG
ACTATCCACT TCAGGTTCCG ACTCGAATGT AAAACCCGAA TCTCTTTCGG TTCCCCTTTA CACACTGAAA CAGAGAGAAG
AGATTCGCGT GCTTGATTGT TATTACTGTT TCTGTATTCC ACACAACGAG TGTCGGAAGA GAGGAGATCG GAAAAAGATG
ACGGAGGCCT ATATAAGGAA CAAGCCAGGC ATGGCGAGCG TGAAGGACAT GCCGGTTCTC CAGGACGGTC CACCGCCGGG
CGGGTTCGCA CCGGTCCGGT TCGCTCGCCG CATCCCTAAC AAGGGCCCAA GCGCTATCGC CATATTCCTC GCTACATTCG
GAACATTCTC TTGGGGCATG TACCAGGTCG GCCAGGGCAA CAAGATCAGA AGGGCACTGA AGGAAGAAAA ATATGCTGCC
CGCCGATCCA TACTGCCTGT GCTACAGGCT GAAGAGGATG AGAGATTTGT TAGAGAGTGG CATAAATACC TCGCGTATGA
GGCAGAAGTG ATGAAGGATG TGCCTGGTTG GAAGGTTGGT GAAAGTGTGT ACAATTCTGG GAGATGGGTG CCCCCAGCCA
GCGGTGAGTT GCGTCCTGAT ATCTGGTGA

>Vigan.08G309400.01
MEVQIEAWTY CTLWAGIRSN KTDCFVGLST SGSDSNVKPE SLSVPLYTLK QREEIRVLDC YYCFCIPHNE CRKRGDRKKM
TEAYIRNKPG MASVKDMPVL QDGPPPGGFA PVRFARRIPN KGPSAIAIFL ATFGTFSWGM YQVGQGNKIR RALKEEKYAA
RRSILPVLQA EEDERFVREW HKYLAYEAEV MKDVPGWKVG ESVYNSGRWV PPASGELRPD IW*