VIGGS:GBrowse

Vigan.08G313300.01

Basic Information:

Name:	Vigan.08G313300.01 Multiple alignment Variant Information
Position:	Chr08:40289250..40291987 (- strand)
Length:	2738

Functional Information:

Description:	Similar to H0315E07.2 protein. [Q01JF1, Oryza sativa]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:52.77,38.59,119.38,53.76,271.02,209.91,139.27,59.85
Arabidopsis thaliana homolog:	AT1G72020.1

Automatic updates:

Name:	NM_001248278 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499985 (LOC100499985), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001248638 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500266 (LOC100500266), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:40289250..40289627 (- strand)
Length:	378
Type:	three_prime_UTR

Position:	Chr08:40289628..40289845 (- strand)
Length:	218
Type:	CDS

Position:	Chr08:40291645..40291717 (- strand)
Length:	73
Type:	CDS

Position:	Chr08:40291718..40291987 (- strand)
Length:	270
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G313300.01
TTCAAACGTC TCTTGAACTT TTGTTTTCGA ATTTGTTTGT CTTAAATTTT AATTTACTTA GCTTAACCAA TAACCACTAA
CAGAGCCCAA TAAAAAAATG GGTTAAATTA AACTCAAATC GAAACAAAGA AGCAAAACAA GGAAGGGTTT TCAGAAGAGT
AGAGCCTAAC GGCGTGCGTA AAGCAAAGAC GAGACTGAAC GCAAAGGCGA GCGTGTAGGA AACCTATAAA ATTTCGAGCG
CGTGGCTTTC GAATCCAATC TGCGTTACCA ATGGCCTTCA ACAACGCACT CAGATCCGCC GCAAAACTCA TCGCTTCTTC
TGAATCTTCC ATCTCCACCT CAGTGAGCAG AGGTTTTCAT TCAACTCCCA TGAAGAGGAT GGGGGGTGGA CATGGCCATG
ATGAGCCCTA TTATATTCAT GCAAAACACA TGTACAACTT GGACAGGATG AAGCACCGGG GGTTGAAAAT GTCTCTTGCT
GTATTCTCTG CTTTCAGCAT TGGTGTTGCA GTTCCTGTGT ATGCTGTCAT TTTCCAGCAA AAGAAGACAG CTTCTGCCTA
ACTCATCTTT CGCTTCATTT GCAACAATAA GGTGGATTTG GGGATCCTAG ACTAGACTAT TGGTTTTGGT GTTTATTATT
GTTTTCAGCT TTGTTTATGT TCAACCACTA TGTGGATTTT CCTGGTATAT CTGATAATAA TCAATTTCTA TGCACATCTG
TTTCATGCGA TTCATCAATT ATTGTTTGAT AATTTGGTTA GTTGCATGCT TGCAATCAGT TCTCATCTGT ATCTTTGCAT
ATGGTAAGAA GGCCCAAAAA GCAGTAAAAC CGAAGTGTTG TATTTATTTT GTTTTTATTT CGATTTTGAA GTAAATTGCA
CAGCACATTT TTTTTAGGTG TTCAAGAAAA TGATAATTGC AGAGGATTTG TTTGCTAAA

[show][hide][copy]CDS

>Vigan.08G313300.01
ATGGCCTTCA ACAACGCACT CAGATCCGCC GCAAAACTCA TCGCTTCTTC TGAATCTTCC ATCTCCACCT CAGTGAGCAG
AGGTTTTCAT TCAACTCCCA TGAAGAGGAT GGGGGGTGGA CATGGCCATG ATGAGCCCTA TTATATTCAT GCAAAACACA
TGTACAACTT GGACAGGATG AAGCACCGGG GGTTGAAAAT GTCTCTTGCT GTATTCTCTG CTTTCAGCAT TGGTGTTGCA
GTTCCTGTGT ATGCTGTCAT TTTCCAGCAA AAGAAGACAG CTTCTGCCTA A

[show][hide][copy]PROTEIN

>Vigan.08G313300.01
MAFNNALRSA AKLIASSESS ISTSVSRGFH STPMKRMGGG HGHDEPYYIH AKHMYNLDRM KHRGLKMSLA VFSAFSIGVA
VPVYAVIFQQ KKTASA*