GBrowse Details

Vigan.08G317800.01

Basic Information:
Name: Vigan.08G317800.01
Multiple alignment
Variant Information
Position: Chr08:40949030..40953359 (+ strand)
Length: 4330
Functional Information:
Description: Similar to uncharacterized protein. [C6TI31, Glycine max]
InterPro: CWC16 protein (IPR007590)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:68.35,43.06,18.30,24.45,17.03,7.55,25.49,13.22
Arabidopsis thaliana homolog: AT1G17130.2
Automatic updates:
Name: NM_001289360 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max unknown LOC100816349 (LOC100816349), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:40949030..40949288 (+ strand)
Length: 259
Type: five_prime_UTR
Position: Chr08:40949289..40949486 (+ strand)
Length: 198
Type: CDS
Position: Chr08:40949765..40950049 (+ strand)
Length: 285
Type: CDS
Position: Chr08:40950270..40950335 (+ strand)
Length: 66
Type: CDS
Position: Chr08:40951047..40951100 (+ strand)
Length: 54
Type: CDS
Position: Chr08:40951200..40951304 (+ strand)
Length: 105
Type: CDS
Position: Chr08:40952179..40952254 (+ strand)
Length: 76
Type: CDS
Position: Chr08:40952957..40953126 (+ strand)
Length: 170
Type: CDS
Position: Chr08:40953127..40953359 (+ strand)
Length: 233
Type: three_prime_UTR


>Vigan.08G317800.01
TTTCTAACCC GACCTCATGG GCCAAACCAT ATAAGAGGCA AAACTGACAA CTCTACCCAA ATCGCAATCG CGTACCTCTA
TTTTCTTTCG TGTTTCTTCT TCTTTACCAC CGTATTTTCT CCGTCGTCGC GTTCTCGCCG TGCCTAGCCT CGCATCGCCG
GCTGTCGCCG TGCCTCACCT CGCCCTGCCA TCTCCGTGCC TCGCCGTCGT GCTTGGGTAG CGTCTCATCA CCTGGTTTTC
CTTCCAATTT TTTAGAAAGA TGGGAGAGAG GAAGGTTTTG AACAAGTATT ACCCTCCGGA CTTTGATCCC TCCAAGCTTC
CCAGAGCCAG AAGGCCTAAG AACCAGCAGA TTAAAGTTCG CATGATGCTT CCCATGAGCA TTCGATGTAA TACTTGTGGC
AATTACATCT ACAAGGGCAC CAAGTTCAAT TCCAGAAAAG AAGATGTTAT TGGCGAGACG TATCTTGGAA TTCAAATATT
CAGATTCTAT TTCAAATGCA CCAAATGTTC AGCTGAAGTT ACCATGAAGA CTGATCCGCA AAATTCAGAT TATATTGTTG
AATCCGGTGC AACCAGAAAT TTTGAGCCTT GGCGTGCAGA AGATGAAGAA GCTGATAAAA TGAAGCAGAA GAGGGATGCT
GAAGAGATGG GAGATGCTAT GAAATCATTG GAAAATAGAA CCTTGGATTC TAAAAGGGAG ATGGACATCC TAGCTGCATT
GGATGAGATG AAGTCAATGA AGTCTAGGCA TGCAACTGTT TCTGTTGATG AAATGTTGGA GGCTCTGCAG CGTACAGCAG
CTGATAAGGA GAAGAGGCTG GAAGAAGAAG ATGAAGCAAT GATAAAATCG GTTGTCTTCC ATAATTCAGG AGGTTATGTC
AAAAGAATTC GTGATGAAGA TATTGAAGCC GAAGAGCAGT TAGATCCGCT TTCACATGGA CATGGTGAAA CAAGTTATAA
TATGAAGAAG CAAAAGATGT CTGAAGATCA TCCAAGCAAA CCAACTGACT CTCTTACAAA AGCTACTTTG GATGGCAAAC
AAGAAAGCGA ACGAAATGGT GGAAAACTTA ATTCTTTGGT GAGAATTTCT ATCACCAAGA AATCAGATGT TAAAAGTCCT
GGAGAACCAG AACCAGAGAA AAAGGATATT AGAACAAATA CTGGATTACA ATCTTTGTGT CAAAATTATG GAAGTGACGA
GGATGAGGAT TAGGTCATAA ATATTGAAGT ACTATTTGAA CCATTGCACT TATTTGTACC ATTGCTCTTA TTTCTGATTG
TTTAGTTGTA TTAGTGATGG ATTGTGATTC TTCCGAAAGC TAAAATATTG TGATACTTGG TTTCCGTTCT GTTTGTATTC
TTGTTACGTT AAGTCTGTGT AAAAACTATA CTTATATCTT GGGAGTTTTA AAAATAAATA AAATATATTT ATTATATGAA
TTTAAA

>Vigan.08G317800.01
ATGGGAGAGA GGAAGGTTTT GAACAAGTAT TACCCTCCGG ACTTTGATCC CTCCAAGCTT CCCAGAGCCA GAAGGCCTAA
GAACCAGCAG ATTAAAGTTC GCATGATGCT TCCCATGAGC ATTCGATGTA ATACTTGTGG CAATTACATC TACAAGGGCA
CCAAGTTCAA TTCCAGAAAA GAAGATGTTA TTGGCGAGAC GTATCTTGGA ATTCAAATAT TCAGATTCTA TTTCAAATGC
ACCAAATGTT CAGCTGAAGT TACCATGAAG ACTGATCCGC AAAATTCAGA TTATATTGTT GAATCCGGTG CAACCAGAAA
TTTTGAGCCT TGGCGTGCAG AAGATGAAGA AGCTGATAAA ATGAAGCAGA AGAGGGATGC TGAAGAGATG GGAGATGCTA
TGAAATCATT GGAAAATAGA ACCTTGGATT CTAAAAGGGA GATGGACATC CTAGCTGCAT TGGATGAGAT GAAGTCAATG
AAGTCTAGGC ATGCAACTGT TTCTGTTGAT GAAATGTTGG AGGCTCTGCA GCGTACAGCA GCTGATAAGG AGAAGAGGCT
GGAAGAAGAA GATGAAGCAA TGATAAAATC GGTTGTCTTC CATAATTCAG GAGGTTATGT CAAAAGAATT CGTGATGAAG
ATATTGAAGC CGAAGAGCAG TTAGATCCGC TTTCACATGG ACATGGTGAA ACAAGTTATA ATATGAAGAA GCAAAAGATG
TCTGAAGATC ATCCAAGCAA ACCAACTGAC TCTCTTACAA AAGCTACTTT GGATGGCAAA CAAGAAAGCG AACGAAATGG
TGGAAAACTT AATTCTTTGG TGAGAATTTC TATCACCAAG AAATCAGATG TTAAAAGTCC TGGAGAACCA GAACCAGAGA
AAAAGGATAT TAGAACAAAT ACTGGATTAC AATCTTTGTG TCAAAATTAT GGAAGTGACG AGGATGAGGA TTAG

>Vigan.08G317800.01
MGERKVLNKY YPPDFDPSKL PRARRPKNQQ IKVRMMLPMS IRCNTCGNYI YKGTKFNSRK EDVIGETYLG IQIFRFYFKC
TKCSAEVTMK TDPQNSDYIV ESGATRNFEP WRAEDEEADK MKQKRDAEEM GDAMKSLENR TLDSKREMDI LAALDEMKSM
KSRHATVSVD EMLEALQRTA ADKEKRLEEE DEAMIKSVVF HNSGGYVKRI RDEDIEAEEQ LDPLSHGHGE TSYNMKKQKM
SEDHPSKPTD SLTKATLDGK QESERNGGKL NSLVRISITK KSDVKSPGEP EPEKKDIRTN TGLQSLCQNY GSDEDED*