GBrowse Details

Vigan.08G324300.01

Basic Information:
Name: Vigan.08G324300.01
Multiple alignment
Variant Information
Position: Chr08:41846602..41850685 (+ strand)
Length: 4084
Functional Information:
Description: Similar to UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like. [XP_004516363.1, Cicer arietinum]
GO: Cellular Component: integral to membrane (GO:0016021)
Molecular Function: phospho-N-acetylmuramoyl-pentapeptide-transferase activity (GO:0008963)
InterPro: Glycosyl transferase, family 4 (IPR000715)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.59,3.06,14.36,7.85,12.63,15.01,15.26,11.91
Arabidopsis thaliana homolog: AT2G41490.1, AT3G57220.1
Automatic updates:
Name: NM_001254305 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like (LOC100801463), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:41846602..41846668 (+ strand)
Length: 67
Type: five_prime_UTR
Position: Chr08:41846669..41847027 (+ strand)
Length: 359
Type: CDS
Position: Chr08:41847888..41847975 (+ strand)
Length: 88
Type: CDS
Position: Chr08:41848085..41848176 (+ strand)
Length: 92
Type: CDS
Position: Chr08:41848277..41848395 (+ strand)
Length: 119
Type: CDS
Position: Chr08:41848486..41848601 (+ strand)
Length: 116
Type: CDS
Position: Chr08:41848676..41848803 (+ strand)
Length: 128
Type: CDS
Position: Chr08:41848892..41848978 (+ strand)
Length: 87
Type: CDS
Position: Chr08:41849665..41849725 (+ strand)
Length: 61
Type: CDS
Position: Chr08:41849821..41849861 (+ strand)
Length: 41
Type: CDS
Position: Chr08:41849959..41850079 (+ strand)
Length: 121
Type: CDS
Position: Chr08:41850360..41850419 (+ strand)
Length: 60
Type: CDS
Position: Chr08:41850420..41850685 (+ strand)
Length: 266
Type: three_prime_UTR


>Vigan.08G324300.01
CAAATCTCCA AAACAAAGAC CAGAGTGTGC CTGAAACAGA ACAACCTTAA CAAACCCAAC AATAACAATG GGAGCACGAA
AGAGACTCTC TTCTTCTTCT GAACCTTCTT CTTCTGTGGT GAAGGAAGAC ACACAGAACA AACCCCAAGA AAAACTGAAC
CTTGCAGACC CTCCAATTGC GCCTCCCAAA TGGGGTCTTC TTCTCAAGCT CTCGCTCCTG CTGCTTCCTT ACTTGTACCT
TCTCTTTTAC TACTACCCCA TCGAATCGGA ACTCCGAAGA TCGATCCTCA TCAATGCGGG AATGAGCCTT GCGGGGTTGT
TCGTCACGGT CAAGATGATC CCCGTCGCGT CCAGATACGT TCAGAAGCGA AATCTATTTG GCTATGATAT CAACAAGAAG
GGAACCCCTC AAGGAAATGT CAAAGTGCCT GAGTCGTTAG GCATAGTTGT TGGTATTGTC TTCTTGGTGG TGGCAATCTT
GTTTCAGTAT TTTAACTTCA CAGCAGATTC AAATTGGCTT GTTGAATATA ATGCAGCATT AGCATGCATC TGTTTCATGA
CATTACTGGG TTTTGTTGAC GATGTCCTTG ATGTACCTTG GAGAGTAAAA TTACTACTCC CATCAATTGC TGCACTTCCT
TTGTTAATGG CATATGCTGG ACACACAACT ATAGTTATAC CAAAGCCACT TGTTGCACAC ATTGGGATAG AGATTTTGGA
TCTTGGATGG ATATATAAAC TATATATGGG GCTATTGGCT GTTTTCTGCA CAAATTCTAT CAATATACAT GCTGGGTTAA
ATGGCCTAGA AGTTGGGCAG ACGGTGGTTA TTGCAACAGC TATCCTGATT CACAATATTA TGCAAATTGG AGCATCAACA
GATCCTGAAT ATAAACAAGC GCATGCATTC TCTATTTACT TAGTTCAGCC CTTGCTTGCT ACCTCTTTAG CCTTACTTTC
TTACAACTGG TATCCATCTT CAGTTTTTGT TGGAGATACA TATACATACT TTGCAGGGAT GACTATGGCC GTGATTGGTA
TTTTAGGCCA TTTTAGTGAA ACTCTCTTGA TTTTCTTCCT ACCCCAAGTT TTGAACTTTC TCTTGTCACT TCCCCAGCTT
TCTGGCTATA TTCCGTGTCC ACGTCATCGT CTGCCAAGGT TTGACCCTCA AACTGGACTA CTGACTGGGA CAAATGATGG
GACACTCGTT AACTTCTTCC TAAGAAATTT AGGCCGCAAA TCTGAAAAAG CACTTTGTAT TTATCTTCTT GCTTTCCAGG
CTATAGCGTG CTGTTTCTGT TTCTTGCTAA GGTATTTCCT TGCTGGTTGG TACAAATAAA AGCCCGAAGT GGATACTAAA
AAAGACATGG ATGAAAACCA CTCGACAGAC TGGTTTTGTT GTATAACCAT TTTTGTAGAA AAATTTAGTG AGAAATAGGC
ATATAGATTT TGGTGAACGA ATTTCTTTCA TCATCTGAAT GTTGTGTACT AATATCAACT TACAGAAATA TACCACTTGA
AAATTTTCTG GAGACATTCA ATAGCTTAAC ATTTTCGTAT ACAATCCGTT AGCAATATCA TTTATAACAA TGCCACCGCG
TGCTC

>Vigan.08G324300.01
ATGGGAGCAC GAAAGAGACT CTCTTCTTCT TCTGAACCTT CTTCTTCTGT GGTGAAGGAA GACACACAGA ACAAACCCCA
AGAAAAACTG AACCTTGCAG ACCCTCCAAT TGCGCCTCCC AAATGGGGTC TTCTTCTCAA GCTCTCGCTC CTGCTGCTTC
CTTACTTGTA CCTTCTCTTT TACTACTACC CCATCGAATC GGAACTCCGA AGATCGATCC TCATCAATGC GGGAATGAGC
CTTGCGGGGT TGTTCGTCAC GGTCAAGATG ATCCCCGTCG CGTCCAGATA CGTTCAGAAG CGAAATCTAT TTGGCTATGA
TATCAACAAG AAGGGAACCC CTCAAGGAAA TGTCAAAGTG CCTGAGTCGT TAGGCATAGT TGTTGGTATT GTCTTCTTGG
TGGTGGCAAT CTTGTTTCAG TATTTTAACT TCACAGCAGA TTCAAATTGG CTTGTTGAAT ATAATGCAGC ATTAGCATGC
ATCTGTTTCA TGACATTACT GGGTTTTGTT GACGATGTCC TTGATGTACC TTGGAGAGTA AAATTACTAC TCCCATCAAT
TGCTGCACTT CCTTTGTTAA TGGCATATGC TGGACACACA ACTATAGTTA TACCAAAGCC ACTTGTTGCA CACATTGGGA
TAGAGATTTT GGATCTTGGA TGGATATATA AACTATATAT GGGGCTATTG GCTGTTTTCT GCACAAATTC TATCAATATA
CATGCTGGGT TAAATGGCCT AGAAGTTGGG CAGACGGTGG TTATTGCAAC AGCTATCCTG ATTCACAATA TTATGCAAAT
TGGAGCATCA ACAGATCCTG AATATAAACA AGCGCATGCA TTCTCTATTT ACTTAGTTCA GCCCTTGCTT GCTACCTCTT
TAGCCTTACT TTCTTACAAC TGGTATCCAT CTTCAGTTTT TGTTGGAGAT ACATATACAT ACTTTGCAGG GATGACTATG
GCCGTGATTG GTATTTTAGG CCATTTTAGT GAAACTCTCT TGATTTTCTT CCTACCCCAA GTTTTGAACT TTCTCTTGTC
ACTTCCCCAG CTTTCTGGCT ATATTCCGTG TCCACGTCAT CGTCTGCCAA GGTTTGACCC TCAAACTGGA CTACTGACTG
GGACAAATGA TGGGACACTC GTTAACTTCT TCCTAAGAAA TTTAGGCCGC AAATCTGAAA AAGCACTTTG TATTTATCTT
CTTGCTTTCC AGGCTATAGC GTGCTGTTTC TGTTTCTTGC TAAGGTATTT CCTTGCTGGT TGGTACAAAT AA

>Vigan.08G324300.01
MGARKRLSSS SEPSSSVVKE DTQNKPQEKL NLADPPIAPP KWGLLLKLSL LLLPYLYLLF YYYPIESELR RSILINAGMS
LAGLFVTVKM IPVASRYVQK RNLFGYDINK KGTPQGNVKV PESLGIVVGI VFLVVAILFQ YFNFTADSNW LVEYNAALAC
ICFMTLLGFV DDVLDVPWRV KLLLPSIAAL PLLMAYAGHT TIVIPKPLVA HIGIEILDLG WIYKLYMGLL AVFCTNSINI
HAGLNGLEVG QTVVIATAIL IHNIMQIGAS TDPEYKQAHA FSIYLVQPLL ATSLALLSYN WYPSSVFVGD TYTYFAGMTM
AVIGILGHFS ETLLIFFLPQ VLNFLLSLPQ LSGYIPCPRH RLPRFDPQTG LLTGTNDGTL VNFFLRNLGR KSEKALCIYL
LAFQAIACCF CFLLRYFLAG WYK*