GBrowse Details

Vigan.08G327200.01

Basic Information:
Name: Vigan.08G327200.01
Multiple alignment
Variant Information
Position: Chr08:42310382..42314909 (- strand)
Length: 4528
Functional Information:
Description: Similar to transcription initiation factor IIB-like. [XP_004304334.1, Fragaria vesca subsp. vesca]
GO: Biological Process: DNA-dependent transcription, initiation (GO:0006352)
Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: TBP-class protein binding (GO:0017025)
InterPro: Transcription factor TFIIB (IPR000812)
Zinc finger, TFIIB-type (IPR013137)
Transcription factor TFIIB, cyclin-like domain (IPR013150)
Cyclin-like (IPR013763)
Transcription factor TFIIB, conserved site (IPR023486)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:830.68,320.43,37.26,26.89,37.72,59.34,30.06,32.49
Arabidopsis thaliana homolog: AT2G41630.1, AT3G10330.1
Automatic updates:
Name: NM_001251414 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor TFIIB (TFIIB1), mRNA.
PubMed ID: 8811869 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:42310382..42310648 (- strand)
Length: 267
Type: three_prime_UTR
Position: Chr08:42310649..42310782 (- strand)
Length: 134
Type: CDS
Position: Chr08:42310971..42311047 (- strand)
Length: 77
Type: CDS
Position: Chr08:42311659..42311747 (- strand)
Length: 89
Type: CDS
Position: Chr08:42311868..42311998 (- strand)
Length: 131
Type: CDS
Position: Chr08:42312091..42312220 (- strand)
Length: 130
Type: CDS
Position: Chr08:42314070..42314094 (- strand)
Length: 25
Type: CDS
Position: Chr08:42314410..42314762 (- strand)
Length: 353
Type: CDS
Position: Chr08:42314763..42314909 (- strand)
Length: 147
Type: five_prime_UTR


>Vigan.08G327200.01
CTATAAATAG AGAAAACGCA GCGAAGTTCC CCTCGCTGCA GTTCTTGGCT GTTTCTCTTT CTCTCTCTTT CTCTCTCTCT
CAAAAACACT CTCCGCGTGC AAACAGAGTC TCCTGCATTG TATTGGAACC TTGAGAGAAG GAAGAAGATG TCAGACGCGT
TCTGCAGCGA CTGCAAGAAG CAGACGGAGG TTGTGTTCGA CCACTCCGCC GGCGACACCG TCTGCTCCGA GTGCGGCCTC
GTCCTCGAGT CCCACTCCAT CGACGAGACC TCCGAGTGGC GTACCTTCGC CAACGAGTCG GGCGATAACG ACCCCAACCG
TGTCGGCGGT CCCTCTAACC CTCTTCTCAC CGACGGCGGC CTGTCTACCG TCATCGCCAA GCCCAACGGC TCCGGCGGCG
AGTTCCTCTC CTCCTCCCTC GGCCGCTGGC AGAACCGCGG TTCCAACCCC GATCGCGCCC TCATCCTGGC TTTCAAGACC
ATCGCCACCA TGTCCGACAG GTTGGGACTG GTTGCGACCA TCAAGGATCG GGCTAATGAG ATATATAAGA GGGTTGAAGA
TCAAAAGTCT AGTAGAGGAA GAAATCAGGA TGCTTTATTG GCTGCTTGTC TCTACATTGC TTGCCGACAA GAAGACAAAC
CTCGTACTGT TAAGGAAATT TGCTCTGTTG CCAATGGGGC CACAAAGAAG GAAATTGGCC GAGCAAAAGA GTACATAGTA
AAACAGCTGG GTTTGGAGAA TGGTCAGTCT GTGGAGATGG GTACAATACA TGCAGGGGAC TTTATGAGGC GATTCTGTTC
TAATCTTGGT ATGAATAATC AAGCTGTTAA AGCTGCTCAG GAAGCTGTGC AGAAATCAGA AGAATTTGAT ATAAGGAGGA
GTCCCATATC AATTGCTGCA GCAGTTATAT ATATCATAAC TCAGCTTTCT GATGATAAGA AGCCTCTTAA AGATATATCA
ATTGCCACAG GCGTTGCTGA AGGAACGATT AGGAACTCCT ACAAGGATCT TTACCCCCAT GTTTCAAAAA TAATACCAAA
TTGGTATGCG AAGGAGGAGG ATTTAAGGAG CCTTTGCAGC CCTTGAATTG TAGAGCAAAA CATTACCATC AATATTTTAA
CAAGTTAAAA GTTATGTCAT TAGAGAGCAT TTTGTTTCCT ATGTAACTGA ACTGTTTATT AAAAAATCGA AGTGCCTTTT
TTTTATGAGT TGTCATTCAT TGCCGTGATT TGCACCATTT TTTTAGACCC TCCTAATCTG AGTTCTCGTT GGGAGCGAGG
CAACAATGTA TGAATTTCTC GACTCTTGCT AAAACATCAT AGGCTTCTTT TTTATGCTGT CATCGCTGCT TTC

>Vigan.08G327200.01
ATGTCAGACG CGTTCTGCAG CGACTGCAAG AAGCAGACGG AGGTTGTGTT CGACCACTCC GCCGGCGACA CCGTCTGCTC
CGAGTGCGGC CTCGTCCTCG AGTCCCACTC CATCGACGAG ACCTCCGAGT GGCGTACCTT CGCCAACGAG TCGGGCGATA
ACGACCCCAA CCGTGTCGGC GGTCCCTCTA ACCCTCTTCT CACCGACGGC GGCCTGTCTA CCGTCATCGC CAAGCCCAAC
GGCTCCGGCG GCGAGTTCCT CTCCTCCTCC CTCGGCCGCT GGCAGAACCG CGGTTCCAAC CCCGATCGCG CCCTCATCCT
GGCTTTCAAG ACCATCGCCA CCATGTCCGA CAGGTTGGGA CTGGTTGCGA CCATCAAGGA TCGGGCTAAT GAGATATATA
AGAGGGTTGA AGATCAAAAG TCTAGTAGAG GAAGAAATCA GGATGCTTTA TTGGCTGCTT GTCTCTACAT TGCTTGCCGA
CAAGAAGACA AACCTCGTAC TGTTAAGGAA ATTTGCTCTG TTGCCAATGG GGCCACAAAG AAGGAAATTG GCCGAGCAAA
AGAGTACATA GTAAAACAGC TGGGTTTGGA GAATGGTCAG TCTGTGGAGA TGGGTACAAT ACATGCAGGG GACTTTATGA
GGCGATTCTG TTCTAATCTT GGTATGAATA ATCAAGCTGT TAAAGCTGCT CAGGAAGCTG TGCAGAAATC AGAAGAATTT
GATATAAGGA GGAGTCCCAT ATCAATTGCT GCAGCAGTTA TATATATCAT AACTCAGCTT TCTGATGATA AGAAGCCTCT
TAAAGATATA TCAATTGCCA CAGGCGTTGC TGAAGGAACG ATTAGGAACT CCTACAAGGA TCTTTACCCC CATGTTTCAA
AAATAATACC AAATTGGTAT GCGAAGGAGG AGGATTTAAG GAGCCTTTGC AGCCCTTGA

>Vigan.08G327200.01
MSDAFCSDCK KQTEVVFDHS AGDTVCSECG LVLESHSIDE TSEWRTFANE SGDNDPNRVG GPSNPLLTDG GLSTVIAKPN
GSGGEFLSSS LGRWQNRGSN PDRALILAFK TIATMSDRLG LVATIKDRAN EIYKRVEDQK SSRGRNQDAL LAACLYIACR
QEDKPRTVKE ICSVANGATK KEIGRAKEYI VKQLGLENGQ SVEMGTIHAG DFMRRFCSNL GMNNQAVKAA QEAVQKSEEF
DIRRSPISIA AAVIYIITQL SDDKKPLKDI SIATGVAEGT IRNSYKDLYP HVSKIIPNWY AKEEDLRSLC SP*