GBrowse Details

Vigan.08G331000.01

Basic Information:
Name: Vigan.08G331000.01
Multiple alignment
Variant Information
Position: Chr08:42668654..42671680 (- strand)
Length: 3027
Functional Information:
Description: Similar to Uncharacterized protein. [I1MHQ4, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Aldo/keto reductase (IPR001395)
Aldo/keto reductase, conserved site (IPR018170)
Aldo/keto reductase subgroup (IPR020471)
NADP-dependent oxidoreductase domain (IPR023210)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:100.42,65.69,27.15,37.68,40.60,69.95,58.01,39.93
Arabidopsis thaliana homolog: AT1G59960.1
Automatic updates:
Name: MH450282 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula chalcone reductase (CHR5) mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:42668654..42668819 (- strand)
Length: 166
Type: three_prime_UTR
Position: Chr08:42668820..42669020 (- strand)
Length: 201
Type: CDS
Position: Chr08:42669256..42669435 (- strand)
Length: 180
Type: CDS
Position: Chr08:42669522..42669765 (- strand)
Length: 244
Type: CDS
Position: Chr08:42671236..42671564 (- strand)
Length: 329
Type: CDS
Position: Chr08:42671565..42671680 (- strand)
Length: 116
Type: five_prime_UTR


>Vigan.08G331000.01
AATTATTTTT TATACAGTAC CTGTTATATA AAGAGATGTA AAGTGTCCAT GTTTGCTCAC CAAGCATATG ATAAATTTCC
AAGTAAAGCA AATATCATAG GGTTTGTGAA ACCATCATGT CTCTAACCAA AATTCCCCAA GTTGTGTTAA AATCCTCTTC
CAACCGGTGC AGCATGCAAG TGATAGCACT TGGAACTGCA GCTGATACAA ACAAAAGCAG TGCAGAAATC ACAAAAGTAG
CAGTAATAGA AGCTATCAAA CTGGGCTATA CACACTTTGA TACTGCAGCA TTCTATGGAT CTGAAGAGGC CTTGGGAGAA
GCCATAGCTG AAGCTCTTCA ACTTGGTCTA ATCAATTCTA GAGAGGAGCT CTTCATCACC TCTAAGCTCT GGCTCACTGA
CAATTTTCCT CATCTTGTTC TTCCTGCTCT GCAGAAATCT CTACAGAGGC TGAAATTAGA ATATTTGGAC CTTTACTTGA
TCCACTGGCC TATCAGTGTG AAACCTGGAG ATTGGGAAAC TCCATATAGT GAAGAGCTAA TAACAACATT TGACTTAAAG
GGTGTGTGGA TAGCAATGGA AGAATGCCAG AAACTAGGCC TTGCAAAATC CATAGGAGTC AGCAACTTCA CATGCAAGAA
ACTTGAAGAT CTACTCTCAT TTGCTACCAT TCCCCCTTCT GTCAATCAAG TGGAGATGAA TCCTGCTTGG CATCAGAAGA
AGCTAAGAGA ATTCTGTGAA GCAAAGGGTA TAATCATAAC TGCATTTTCT CCTCTGGGAG CCAAAGGGGC CAGTTGGGGC
ACCAATGAAG TCATGGACAG TGAAATACTC AAGGAAATTG CACAAGCACA TGTCCGAACT GTTGCTCAGG TAAGTCTTAG
ATGGTTGTAT GAACAAGGTG TGACTATTGC GGCAAAGAGC TACAACAAAG AGAGAATGAA GCAAAACTTG GAAATATTTG
ATTGGTCTCT TACAAGAGAT GACCATGAAA AGATTAATCA AATCAAGCAG ATTCGTACTA ACAACGGACC AGTGGTGTTC
TTTGATAACC TTTGGGACGG GGAAACTTAG GTTTCATGTC TGAAAAATTA TTATCATCAC TTTCTTGAAG TCTTGAGTAC
ACTCTATGAT GTAATTTCTA TTTTATAGAT ATTATGTTGT TTGTCCTACT TCTCACTTGC TGTGGAATAC TATACATTGA
TCAACAATAG CTTTTAAAAT TATATTATTA GATGGA

>Vigan.08G331000.01
ATGTCTCTAA CCAAAATTCC CCAAGTTGTG TTAAAATCCT CTTCCAACCG GTGCAGCATG CAAGTGATAG CACTTGGAAC
TGCAGCTGAT ACAAACAAAA GCAGTGCAGA AATCACAAAA GTAGCAGTAA TAGAAGCTAT CAAACTGGGC TATACACACT
TTGATACTGC AGCATTCTAT GGATCTGAAG AGGCCTTGGG AGAAGCCATA GCTGAAGCTC TTCAACTTGG TCTAATCAAT
TCTAGAGAGG AGCTCTTCAT CACCTCTAAG CTCTGGCTCA CTGACAATTT TCCTCATCTT GTTCTTCCTG CTCTGCAGAA
ATCTCTACAG AGGCTGAAAT TAGAATATTT GGACCTTTAC TTGATCCACT GGCCTATCAG TGTGAAACCT GGAGATTGGG
AAACTCCATA TAGTGAAGAG CTAATAACAA CATTTGACTT AAAGGGTGTG TGGATAGCAA TGGAAGAATG CCAGAAACTA
GGCCTTGCAA AATCCATAGG AGTCAGCAAC TTCACATGCA AGAAACTTGA AGATCTACTC TCATTTGCTA CCATTCCCCC
TTCTGTCAAT CAAGTGGAGA TGAATCCTGC TTGGCATCAG AAGAAGCTAA GAGAATTCTG TGAAGCAAAG GGTATAATCA
TAACTGCATT TTCTCCTCTG GGAGCCAAAG GGGCCAGTTG GGGCACCAAT GAAGTCATGG ACAGTGAAAT ACTCAAGGAA
ATTGCACAAG CACATGTCCG AACTGTTGCT CAGGTAAGTC TTAGATGGTT GTATGAACAA GGTGTGACTA TTGCGGCAAA
GAGCTACAAC AAAGAGAGAA TGAAGCAAAA CTTGGAAATA TTTGATTGGT CTCTTACAAG AGATGACCAT GAAAAGATTA
ATCAAATCAA GCAGATTCGT ACTAACAACG GACCAGTGGT GTTCTTTGAT AACCTTTGGG ACGGGGAAAC TTAG

>Vigan.08G331000.01
MSLTKIPQVV LKSSSNRCSM QVIALGTAAD TNKSSAEITK VAVIEAIKLG YTHFDTAAFY GSEEALGEAI AEALQLGLIN
SREELFITSK LWLTDNFPHL VLPALQKSLQ RLKLEYLDLY LIHWPISVKP GDWETPYSEE LITTFDLKGV WIAMEECQKL
GLAKSIGVSN FTCKKLEDLL SFATIPPSVN QVEMNPAWHQ KKLREFCEAK GIIITAFSPL GAKGASWGTN EVMDSEILKE
IAQAHVRTVA QVSLRWLYEQ GVTIAAKSYN KERMKQNLEI FDWSLTRDDH EKINQIKQIR TNNGPVVFFD NLWDGET*