GBrowse Details

Vigan.08G335400.01

Basic Information:
Name: Vigan.08G335400.01
Multiple alignment
Variant Information
Position: Chr08:43225382..43228238 (+ strand)
Length: 2857
Functional Information:
Description: Similar to OTU domain-containing protein At3g57810-like. [XP_004497941.1, Cicer arietinum]
InterPro: Ovarian tumour, otubain (IPR003323)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.10,12.71,8.22,13.87,9.96,15.01,9.26,11.93
Arabidopsis thaliana homolog: AT3G57810.2
Automatic updates:
Name: NM_001255344 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max OTU domain-containing protein At3g57810-like (LOC100810338), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:43225382..43225456 (+ strand)
Length: 75
Type: five_prime_UTR
Position: Chr08:43225457..43226075 (+ strand)
Length: 619
Type: CDS
Position: Chr08:43226227..43226348 (+ strand)
Length: 122
Type: CDS
Position: Chr08:43226612..43226652 (+ strand)
Length: 41
Type: CDS
Position: Chr08:43227421..43227519 (+ strand)
Length: 99
Type: CDS
Position: Chr08:43227609..43227780 (+ strand)
Length: 172
Type: CDS
Position: Chr08:43227781..43228238 (+ strand)
Length: 458
Type: three_prime_UTR


>Vigan.08G335400.01
GTAGTAACGT TCTCTGGCCA GATTAAAAAA ATTAATTCTG ATGAAAAATA GTAATGTTAC CTGGAAGAGT TTCTGATGAA
TATGGTTGAC TTTTATTCAG GCAATGTAAA CATGAGTGTT TGCTTTTCTA CTAGTCAATC TTCAATAAAT GCTGTTGTCC
TGAAAGGTCG TTCTCCACTG CTGATGAGCA GTAACATTCA TGGACTTTGG TCCCGCGGAA TATCCTCTTC ACTTCCTTCT
AGTTCATTTC CTGGGGAGTC AGAGATAAAT CATGATTTTT CTGTTTGCAC AAAATTGTCT TGTTCAACGG TTATGGGCCA
AACAATTAGA GGAGGCTTCC TTCGATCATG CTGCTCCAAG CAAAGGGGAA ATACTCGATT CTTTAGTTCT GTAGTACCTC
GGAAGAGGTA TCATGAAATT TCACTGGCAT GCCAAAGTAT GAATATGAGG CTTTTGTTAC CCAAACAAAA ATTGCTGCAC
AAAGTTAAGT GTAATTTTGG TCCAGTAAGT CGGCTGCGGG GATGTGCTTC AGTTGGCTTG ATTTTTGGGT TACTTGTATG
TAGTTCTAGT AGTGAGCCTG CTCATGCCGA ATCACATTCT GAAAATGAAA ATAGGAAAGA TGACTGCAAC GACTATGAGT
CAAATGTTAA ATTCTCACAT GGGAAGAAAG TTTATAGTGA CTATTCTGTA ATTGGAATAC CAGGGGATGG AAGGTGTTTA
TTCCGCTCTG TTGCTCGAGG GGCCTGTTTG AGGTCTGGAA AGCCTCCTCC TAGTGAAAGC ATCCAAAGGG AGCTGGCGGA
TGATTTACGA GCCAGAGTTG CTGATGAGTT TGTCAAAAGA AGGGAAGAAA CTGAATGGTT TATTGAAGGT GATTTTGATA
CATATATTTC ACACATAAGG AAGCCTCACG TGTGGGGAGG TGAACCAGAA TTGTTCATTG CATCACATGT TTTGCAGATG
CCTATCACTG TATACATGTA TGATAAGGAG GCTGGTGGCT TGATATCAAT TGCCGAGTAT GGCCAAGAAT ACGGCAAAGA
AAACCCAATT AGAGTTCTCT ACCACGGGTT TGGTCATTAT GATGCCCTTG ATATCCCTAC AAGGAAGGGT CCTAAGCCAC
GTCTGTAGCA TTTCATATTC AAAAAGTGAC AGATTAAAGC CTGTATTGGT TTCCTTTAGT AACATTTACT AAGGTCATTC
ATAGGTTCAG TTTCCCAAAA ACCTTATGCC TTTCAGATCT TGAAGGCCAC AGGTTCCATG GCCAAAGTGA ACAATGAGTC
CCTCTTGACT TCAGGGGACC TTAACCTTAA AGGTTCAAAG TTCAAACTAT CTACTAACTT TTGTGAACCC TTTCTGTGAA
AGGTAAATAA TGGTATCCCC TTAAGTCTGA GTTCACCACC ATTGCTTCCA TTGAGAAAAT ATATGCAATG TCTGATAAAG
CTGGAAGTTG GTGCAATTAT TGAGATGTTA TGGATTCCAT GTATGTGGTG TAAGTTATGT TCAGGGATCT AATGTTTAAT
TTTTACATAA CTAAACTTCT TTGTTTACCT TTTCATCTAT TGTGCACTTT TCAAGTCAAA TCTGTG

>Vigan.08G335400.01
ATGAATATGG TTGACTTTTA TTCAGGCAAT GTAAACATGA GTGTTTGCTT TTCTACTAGT CAATCTTCAA TAAATGCTGT
TGTCCTGAAA GGTCGTTCTC CACTGCTGAT GAGCAGTAAC ATTCATGGAC TTTGGTCCCG CGGAATATCC TCTTCACTTC
CTTCTAGTTC ATTTCCTGGG GAGTCAGAGA TAAATCATGA TTTTTCTGTT TGCACAAAAT TGTCTTGTTC AACGGTTATG
GGCCAAACAA TTAGAGGAGG CTTCCTTCGA TCATGCTGCT CCAAGCAAAG GGGAAATACT CGATTCTTTA GTTCTGTAGT
ACCTCGGAAG AGGTATCATG AAATTTCACT GGCATGCCAA AGTATGAATA TGAGGCTTTT GTTACCCAAA CAAAAATTGC
TGCACAAAGT TAAGTGTAAT TTTGGTCCAG TAAGTCGGCT GCGGGGATGT GCTTCAGTTG GCTTGATTTT TGGGTTACTT
GTATGTAGTT CTAGTAGTGA GCCTGCTCAT GCCGAATCAC ATTCTGAAAA TGAAAATAGG AAAGATGACT GCAACGACTA
TGAGTCAAAT GTTAAATTCT CACATGGGAA GAAAGTTTAT AGTGACTATT CTGTAATTGG AATACCAGGG GATGGAAGGT
GTTTATTCCG CTCTGTTGCT CGAGGGGCCT GTTTGAGGTC TGGAAAGCCT CCTCCTAGTG AAAGCATCCA AAGGGAGCTG
GCGGATGATT TACGAGCCAG AGTTGCTGAT GAGTTTGTCA AAAGAAGGGA AGAAACTGAA TGGTTTATTG AAGGTGATTT
TGATACATAT ATTTCACACA TAAGGAAGCC TCACGTGTGG GGAGGTGAAC CAGAATTGTT CATTGCATCA CATGTTTTGC
AGATGCCTAT CACTGTATAC ATGTATGATA AGGAGGCTGG TGGCTTGATA TCAATTGCCG AGTATGGCCA AGAATACGGC
AAAGAAAACC CAATTAGAGT TCTCTACCAC GGGTTTGGTC ATTATGATGC CCTTGATATC CCTACAAGGA AGGGTCCTAA
GCCACGTCTG TAG

>Vigan.08G335400.01
MNMVDFYSGN VNMSVCFSTS QSSINAVVLK GRSPLLMSSN IHGLWSRGIS SSLPSSSFPG ESEINHDFSV CTKLSCSTVM
GQTIRGGFLR SCCSKQRGNT RFFSSVVPRK RYHEISLACQ SMNMRLLLPK QKLLHKVKCN FGPVSRLRGC ASVGLIFGLL
VCSSSSEPAH AESHSENENR KDDCNDYESN VKFSHGKKVY SDYSVIGIPG DGRCLFRSVA RGACLRSGKP PPSESIQREL
ADDLRARVAD EFVKRREETE WFIEGDFDTY ISHIRKPHVW GGEPELFIAS HVLQMPITVY MYDKEAGGLI SIAEYGQEYG
KENPIRVLYH GFGHYDALDI PTRKGPKPRL *