VIGGS:GBrowse

Vigan.08G335700.01

Basic Information:

Name:	Vigan.08G335700.01 Multiple alignment Variant Information
Position:	Chr08:43264987..43267566 (+ strand)
Length:	2580

Functional Information:

Description:	Similar to ras-related protein RABA4d-like. [XP_004497938.1, Cicer arietinum]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	Small GTPase superfamily, ARF type (IPR024156)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:9.34,1.61,1.78,2.23,32.23,6.77,14.55,6.06
Arabidopsis thaliana homolog:	AT3G12160.1

Automatic updates:

Name:	NM_001369339 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ras-related protein RABA4d-like (LOC100808058), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:43264987..43265259 (+ strand)
Length:	273
Type:	five_prime_UTR

Position:	Chr08:43265260..43265486 (+ strand)
Length:	227
Type:	CDS

Position:	Chr08:43266743..43267187 (+ strand)
Length:	445
Type:	CDS

Position:	Chr08:43267188..43267566 (+ strand)
Length:	379
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G335700.01
AATTCTACCA ATTCTCCCAT TTCCTCACCC CAAACGGCCA CCACCCCTTT CCTTCTTCCT CACGCCTCTT CTTCTGTCAA
CCCAACAACC AAAACGACCG CGTTTCCCTC CTTCTTCCTA TCACCAACAT GTGATGATCA TGATGATCAC GACGATCATG
ACTTCCCCCC TCCGCGATCC CAACAACAGC TTTTCGCAAT GCTTCATCTA AACGACGTCG TCACCAACGG CACCCTCCGT
CTCGCGTAGC CATCACCGTC TCATTTCCGC GGGATGTCGA ACCTGTACGG CGATTTCAAC CACAAGATCG ATTACGTCTT
CAAAGTCGTG TTGATCGGTG ACTCCGCCGT CGGCAAGACC CAGCTCCTCG CGCGCTTCGC CAGAAACCAA TTCAGCGCCG
ATTCGAAAGC CACCATAGGC GTGGAGTTTC AGACCAAAAC GCTCATCATC GATAACAAAA CCGTCAAGGC TCAAATATGG
GACACCGCGG GCCAAGAAAG GTACAGGGCA GTTACTAGTG CATATTATCG CGGTGCTGTT GGAGCAATGT TAGTTTATGA
CATGACTAAG CGTCAATCAT TTGATAACAT GGCAAAGTGG TTAGAGGAAC TGAGAGGCCA TGCAGACAAA AATATTGTTG
TCATGCTAAT TGGCAACAAA TGTGATCTTG GAACTCTTAG AGCAGTGCCA ACTGAAGATG CCGAGGAGTT TGCTCAAAGA
GAGAACCTAT TCTTTATGGA GACATCAGCA CTTGAGTCCA CTAATGTGGA AACTGCCTTT CTGACCATTC TAACTGAGAT
ATACAGACTT ATAAGCAAGA AAACACTAAC TGCCAATGAT GATGCTGATC CACTTGGCAG TTCAGGGCTT CTGAAGGGAA
CCAAGATAAT TGTTCCCAAC CAAGACATGA ATGCTGGTGA AAGAAAGGGT GGCTGCTGTG GATAGTCTTA GGTTTCGCTT
GTTTCTACTC TTCTTGGGAG CATATTGCTC CCCCGACTCC GCCTACATGT GGCGTTTGTA GAGAGGACAG ATACTTTTAT
TGGTCATCCA ATCAGCAAAA TGTAGTCTAT ATTTATTTAT CACTATGCTT GTTGATCACA AGCTTGCAGT TTTTCTGCTG
TTTTAATCTT TTACAGCTTT AGGATTTCAA TTTGTTAATA CAAATCCCCG GTTTTGAAGG GATGGTTCAG TTCAGACAGA
GGAATGCAAA CTGTATAACT AGCTGGATGC AGTTGTTTTT GGCCTGTAGT TGAATTTTTT AGTATTAATG TTGTCTTTGA
TGTGAGATAC TTATTAATTA TAGGAAGGGA TCAACTTACA GTAA

[show][hide][copy]CDS

>Vigan.08G335700.01
ATGTCGAACC TGTACGGCGA TTTCAACCAC AAGATCGATT ACGTCTTCAA AGTCGTGTTG ATCGGTGACT CCGCCGTCGG
CAAGACCCAG CTCCTCGCGC GCTTCGCCAG AAACCAATTC AGCGCCGATT CGAAAGCCAC CATAGGCGTG GAGTTTCAGA
CCAAAACGCT CATCATCGAT AACAAAACCG TCAAGGCTCA AATATGGGAC ACCGCGGGCC AAGAAAGGTA CAGGGCAGTT
ACTAGTGCAT ATTATCGCGG TGCTGTTGGA GCAATGTTAG TTTATGACAT GACTAAGCGT CAATCATTTG ATAACATGGC
AAAGTGGTTA GAGGAACTGA GAGGCCATGC AGACAAAAAT ATTGTTGTCA TGCTAATTGG CAACAAATGT GATCTTGGAA
CTCTTAGAGC AGTGCCAACT GAAGATGCCG AGGAGTTTGC TCAAAGAGAG AACCTATTCT TTATGGAGAC ATCAGCACTT
GAGTCCACTA ATGTGGAAAC TGCCTTTCTG ACCATTCTAA CTGAGATATA CAGACTTATA AGCAAGAAAA CACTAACTGC
CAATGATGAT GCTGATCCAC TTGGCAGTTC AGGGCTTCTG AAGGGAACCA AGATAATTGT TCCCAACCAA GACATGAATG
CTGGTGAAAG AAAGGGTGGC TGCTGTGGAT AG

[show][hide][copy]PROTEIN

>Vigan.08G335700.01
MSNLYGDFNH KIDYVFKVVL IGDSAVGKTQ LLARFARNQF SADSKATIGV EFQTKTLIID NKTVKAQIWD TAGQERYRAV
TSAYYRGAVG AMLVYDMTKR QSFDNMAKWL EELRGHADKN IVVMLIGNKC DLGTLRAVPT EDAEEFAQRE NLFFMETSAL
ESTNVETAFL TILTEIYRLI SKKTLTANDD ADPLGSSGLL KGTKIIVPNQ DMNAGERKGG CCG*