GBrowse Details

Vigan.08G340400.01

Basic Information:
Name: Vigan.08G340400.01
Multiple alignment
Variant Information
Position: Chr08:43760658..43764504 (+ strand)
Length: 3847
Functional Information:
Description: Similar to Structural constituent of ribosome, putative. [B9T8N7, Ricinus communis]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L18/L5 (IPR005484)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.42,3.18,2.22,4.66,3.59,3.10,2.00,4.22
Arabidopsis thaliana homolog: AT1G08845.2
Automatic updates:
Name: BK009284 NCBI(nuccore)
Organism: Medicago truncatula
Description: TPA_inf: Medicago truncatula L18 ribosomal protein Heart Stopper (Heart Stopper) mRNA, complete cds.
PubMed ID: 26105995 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:43760658..43762219 (+ strand)
Length: 1562
Type: five_prime_UTR
Position: Chr08:43762220..43762330 (+ strand)
Length: 111
Type: CDS
Position: Chr08:43763702..43764154 (+ strand)
Length: 453
Type: CDS
Position: Chr08:43764155..43764504 (+ strand)
Length: 350
Type: three_prime_UTR


>Vigan.08G340400.01
TATCTTATTT GGTTCGGCTA CTAAGTGTAT TAAATATGAT GGATACTGAG TAGCATCGTT TCTCATGACA CACCAAGTGT
TTAGTTATTT GTCTCAGTGG CGCGATAGAG AATATATGTT GTGATGGAAT GTATACGTGT CTCTTGTTTG TTGAGGTTTG
GCATTCAATA GAATTTTGGG ATATTTGTGA GGTCATGGTT CCTTGTCTTG GGATGCTGAA ACTGAGTAGG GAGTTGGGAG
TTTCTATTTT GTGGTTTGAA TTCTAGTATT GGTTCTGTTT AGGTGAGAAC TATGTTGCAC GGGTATGGGG ATTGGGCGGT
GGTATGCTGT AATTCTGAAA TTGTTGATTC CATTTAAAGT TGTTGTCCTT CCCTTAAGAG GTGTGTGATA AGAGGGAAGC
TTTTAGTTTC ACAGGAATTT CAAGTTGGGA ATGTTTGGTT TATTTTTTGA AAAAATAACA GCTAAATATT TGAGGAGGGA
TAGAATAGGG ATCCGAGGAG AAACAGTGGC TTTGAGTTGT TTGTTAATAC TGTTGGTTTT CACTTTCCTC TTGTGATTAT
TAGCTTCAAA GATGGTGTCT CGTTTTGGTT TTGATAGATT GGTTAAAGGC TCGGAGTAGT CATAGGACCA CTTAGTAACT
AGATTGGTTT AAGGGGAAAA TGGATATTTT TTATTTTATT TTCTGCGTGT TGTGTGACAA GTCGTGACTT TGTATTTTGG
TCACCAGGTG TTTGATAAAA TGTTTGACTG TCACGTACAA TACATTATTG CTTTGGTACA AAGAAAGTTA GTTGTCAATG
TGAATTCCAG TGTGGTTGGT TTGTTTTTGT TGATAGTGTT TTTTTTGTCA GGGTAAAATG TTTAGGTGTT TGGGTAGATA
TATGAATATA TTGTGGACAT GGTCTTAACT CTTAAGCTTT TATCTTTTCT TCTCAAAATA ATTAAATACC CATGAAAAAG
TGCATCTATT ATTAGAGTTT ACACATACCG TGGTTAGAGC TTCATAAACT TGTCTCGTAC ACTAGAATTG TAAACTTGTA
AGAGTTTACT TGTATAAAAC TGTATTAAAA TATCTGTCAA TAATATAATA ATTTAATATT ATATTAAAAT ATTTGTACTA
TATTATGCTA TAAATAATTT TCGTATTTTT TTACTGTTTT TTTGTTATCA GTTGATCATA TTATTTAATA GTTCTTTTAT
ATTTTTCTAA TATTATTATA CTTGTATCAT TACACTTGAG TTGATCTATT ATATGTATTA TGTTTTGCAT AAAAGAATGT
TGTTGGACTT AAAGTGAGCC CCAACAATCC AAATGTCAAG AGAAGCGTAA AAGCACGCAT AAACTCTAAT ATAACTCAAC
TCACTAATTT GTAGCCCAAT CTTTGAGGAG GACAGACAAG AGATAGGATA CAGGAGTGCA GCGAGAGCTC AGAAATCCAA
GACTAATCAA AGTAGAACGT CGAAACTTAA AACGACCTTA GAAAGACACC AATGCAATCC AGTGTTCAAT AGGCTATAGC
AAGCTTCAAC TAGTTAGGAG GGGATATAGG GTTCCGGGAA ACATGTTGAA ACAAATAATT GGCAGGACAT GCAGAACCAG
TGCTTATGCT TTTGAAGAAA ACAGAGTTTT GCCTTGGATA TATCTGCCTT TGTGCTTGTT CCACAATGGA CGGGCACATA
TGGCACCTAG AAGCTTTTTT GGGGTAGAGG ATTTCCTTGA TGATGACAAT AGCCGACCTT ACACATACCA AAAAGGGAAG
AAGTCAAAGA ATCCAAACAA GCACATATCT TTCAAACAAA GAACGATTGC GTACATGGAG CCGTTTACAC TTGATGTGTT
TATCTCAAAA CGCTTTGTAT CAGCTTCACT TACTCACAGG GTGACAAGCA AACAGGTTGC AGTTGCTGGT ACCAACTCCA
AGGACATAAA AGCTGTTCTT AGGTCTCGGT CAGACATACC AGCATGCATA TCCATCGGTA AGATTTTATC TGAAAGAGCA
AGAGAAGCTG ATGTTTACAC TGCTTCCTAC ACTCCAAGGG AAAGGGACAA GTTTGAAGGG AAAATCAGAG CTGTAGTTCA
ATCACTCATT GATAATGGGA TTGATATCAA GGTTTACCTT GATTGAGTTG ATTAACTCAA GATTTTGTGG CTATCAGTTT
GATATCAATT GGTGATCACC GGTTTGGTTT TGTGGCTAGT TAGTTACTGC TTTTATGGAT AGGAAGGTGG ACAAGCATTG
TTTATGGTAA TGAAACTAAA ACAACTCATG TTGCCGTATT TTTAGGCTAG TAATTTGGGA AAATTATTCA TGAACAAAGA
AATATATCTT TCAAACTCAT GCATGCAATT GGATAACTCC TGGTTTCACT GTAACTATCT TAGAGTTTGT CATCTTCTAT
TTGTCATTTC CTCTCTTTCA CTTATTTAGC TGTGAACTAA ATTGGATTCT CGCACTATTG TACCAGAATA GAAAAA

>Vigan.08G340400.01
ATGTTGAAAC AAATAATTGG CAGGACATGC AGAACCAGTG CTTATGCTTT TGAAGAAAAC AGAGTTTTGC CTTGGATATA
TCTGCCTTTG TGCTTGTTCC ACAATGGACG GGCACATATG GCACCTAGAA GCTTTTTTGG GGTAGAGGAT TTCCTTGATG
ATGACAATAG CCGACCTTAC ACATACCAAA AAGGGAAGAA GTCAAAGAAT CCAAACAAGC ACATATCTTT CAAACAAAGA
ACGATTGCGT ACATGGAGCC GTTTACACTT GATGTGTTTA TCTCAAAACG CTTTGTATCA GCTTCACTTA CTCACAGGGT
GACAAGCAAA CAGGTTGCAG TTGCTGGTAC CAACTCCAAG GACATAAAAG CTGTTCTTAG GTCTCGGTCA GACATACCAG
CATGCATATC CATCGGTAAG ATTTTATCTG AAAGAGCAAG AGAAGCTGAT GTTTACACTG CTTCCTACAC TCCAAGGGAA
AGGGACAAGT TTGAAGGGAA AATCAGAGCT GTAGTTCAAT CACTCATTGA TAATGGGATT GATATCAAGG TTTACCTTGA
TTGA

>Vigan.08G340400.01
MLKQIIGRTC RTSAYAFEEN RVLPWIYLPL CLFHNGRAHM APRSFFGVED FLDDDNSRPY TYQKGKKSKN PNKHISFKQR
TIAYMEPFTL DVFISKRFVS ASLTHRVTSK QVAVAGTNSK DIKAVLRSRS DIPACISIGK ILSERAREAD VYTASYTPRE
RDKFEGKIRA VVQSLIDNGI DIKVYLD*