GBrowse Details

Vigan.08G342000.01

Basic Information:
Name: Vigan.08G342000.01
Multiple alignment
Variant Information
Position: Chr08:44012028..44016753 (- strand)
Length: 4726
Functional Information:
Description: Similar to protein. [D7LI02, Arabidopsis lyrata subsp. lyrata]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:79.57,65.69,9.99,9.45,28.47,32.65,26.78,9.35
Arabidopsis thaliana homolog: AT2G41945.3
Automatic updates:
Name: NM_001249561 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305518 (LOC100305518), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:44012028..44012523 (- strand)
Length: 496
Type: three_prime_UTR
Position: Chr08:44012524..44012666 (- strand)
Length: 143
Type: CDS
Position: Chr08:44015429..44015474 (- strand)
Length: 46
Type: CDS
Position: Chr08:44015680..44015738 (- strand)
Length: 59
Type: CDS
Position: Chr08:44016103..44016154 (- strand)
Length: 52
Type: CDS
Position: Chr08:44016373..44016423 (- strand)
Length: 51
Type: CDS
Position: Chr08:44016528..44016653 (- strand)
Length: 126
Type: CDS
Position: Chr08:44016654..44016753 (- strand)
Length: 100
Type: five_prime_UTR


>Vigan.08G342000.01
AAAAGATGTC ACAAATTTAT TTTAAATAAA GTAAATTGCG AGAGTATTCA ATATTCTTCT TCATCTTTCT AAACCCTTTC
GTAGCAGCAG AGAGAGAGGA ATGGGTACTC GAGAGGTCTA CGAAGAGAAA CTAAGGAGGG GAAATCTCGA TCGCGATCCT
ACTCTCAACC CCGGCCTTGG TTCCCCACGA TGCCCTCGTT GTCTCTCGCT TCTCAACCCT AATTCCGAAA GAGGCGAGTG
GACCATCACT CCCGTCTTGC ACGACGCCAC TGCTGTCGCT GGCTTGGGGA TTGGTGCTAT GCTTAGTGTA GTTCATGGTT
TCAATACAGG TTTGCCATAT CTTCTAAAGG CTGTGAAGGG ACCGAAGTGG CTTCCACTAG TCGTTGGGAT TCCTCCATTG
TTGATATTCT CAGGCATAAG TTCTGCTTTT GGAGGATATG TGCTTCCAAA GTTCACTCAA CTCACCGTAA CATCCTATTA
TGCTGCATCG AGTGCCTCAC ATTATGGAAT CTCTCTTGTT ACCCGACATA TTGAAGAGAA CTACAGCTCA AAAACTCAGC
ATCTCAAGAG GCTCTGATGA TATTCCTTTC GGGTGTACTT ACAAGGAAAA TACATTACCT GGCAATTTTG TCTGCATAAA
CGTCCTGTGG ATGGTTAGGA TTGTTAAACC CTAGTAACAT TTTTGTTTCT CCTTACGGAA ATGCTTATAT GTGAATAATC
CTTGTTTATA TTTTACTATT AAGCTTTGGT AATAAGAAGT CCATTTATTT AACTGTAGTG TGTAGTGTTT CAAGGGCAAG
CAACTATGAA AAATAATTAA CAAAAAATCT AGTCAACCTT ATTTTTATAG TTATTTTATC TGTAAGGTTA ATTTACATAA
AACTAATTCT AGTCTGCAGC AGTTGAATGG GCCTCACATG CTCTGCTAGG GTATATTGGT GGTTCTACTC TCCTAAATGA
TTTAGTTATT GTTTCTCTAT CTCTGTACTT TATTCTTACT CATAATATAA AACATGATTG ACATGCCTTT TCTCGTAATT
TAATTTGTTT AGGTTACGGA AGTGAATGCG TTC

>Vigan.08G342000.01
ATGGGTACTC GAGAGGTCTA CGAAGAGAAA CTAAGGAGGG GAAATCTCGA TCGCGATCCT ACTCTCAACC CCGGCCTTGG
TTCCCCACGA TGCCCTCGTT GTCTCTCGCT TCTCAACCCT AATTCCGAAA GAGGCGAGTG GACCATCACT CCCGTCTTGC
ACGACGCCAC TGCTGTCGCT GGCTTGGGGA TTGGTGCTAT GCTTAGTGTA GTTCATGGTT TCAATACAGG TTTGCCATAT
CTTCTAAAGG CTGTGAAGGG ACCGAAGTGG CTTCCACTAG TCGTTGGGAT TCCTCCATTG TTGATATTCT CAGGCATAAG
TTCTGCTTTT GGAGGATATG TGCTTCCAAA GTTCACTCAA CTCACCGTAA CATCCTATTA TGCTGCATCG AGTGCCTCAC
ATTATGGAAT CTCTCTTGTT ACCCGACATA TTGAAGAGAA CTACAGCTCA AAAACTCAGC ATCTCAAGAG GCTCTGA

>Vigan.08G342000.01
MGTREVYEEK LRRGNLDRDP TLNPGLGSPR CPRCLSLLNP NSERGEWTIT PVLHDATAVA GLGIGAMLSV VHGFNTGLPY
LLKAVKGPKW LPLVVGIPPL LIFSGISSAF GGYVLPKFTQ LTVTSYYAAS SASHYGISLV TRHIEENYSS KTQHLKRL*