GBrowse Details

Vigan.08G343600.01

Basic Information:
Name: Vigan.08G343600.01
Multiple alignment
Variant Information
Position: Chr08:44157329..44161082 (- strand)
Length: 3754
Functional Information:
Description: Similar to DNA-directed RNA polymerases I, II, and III subunit RPABC3-like. [XP_004514482.1, Cicer arietinum]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
InterPro: RNA polymerase, Rpb8 (IPR005570)
Nucleic acid-binding, OB-fold (IPR012340)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:70.29,59.19,52.80,52.91,97.78,34.02,30.69,45.68
Arabidopsis thaliana homolog: AT3G59600.1
Automatic updates:
Name: NM_001250106 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499860 (LOC100499860), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001252708 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DNA-directed RNA polymerases I, II, and III subunit RPABC3-like (LOC100816388), transcript variant 1, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
14624337 NCBI(pubmed)
Status: Known Variant
Name: NM_001415773 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DNA-directed RNA polymerases I, II, and III subunit RPABC3-like (LOC100816388), transcript variant 2, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
14624337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:44157329..44158065 (- strand)
Length: 737
Type: three_prime_UTR
Position: Chr08:44158066..44158177 (- strand)
Length: 112
Type: CDS
Position: Chr08:44158601..44158689 (- strand)
Length: 89
Type: CDS
Position: Chr08:44160079..44160236 (- strand)
Length: 158
Type: CDS
Position: Chr08:44160836..44160914 (- strand)
Length: 79
Type: CDS
Position: Chr08:44160915..44161082 (- strand)
Length: 168
Type: five_prime_UTR


>Vigan.08G343600.01
AGTCTCAACG CAGAGTATGT TCTGACAACA ATCTTCTTCT TGCCGTTCTT CTAATCTTGT TTGCATCTTT TGATTCCTAA
AGCTTCTTCG AAATTCGCCT TTCTCTGCTT TGCGATTTTA TATTTCAGAT TATTGGTAAT TTGTTTCACA AGTTCTTCTG
TTTCAGCCAT GGTGGAGAAT AATCTCTTCG AGGATATTTT CAGAGTAGAA AAACTAAACC CCGATGACAA AAAATTATTC
GATAAAGTTA CTCGAATTGA AGCAAGAAGT GAAAAGTTTG ACATGTTTAT GCACCTTGAT ATCAATTCTG AGATATATCC
ATTAAAGGTT GGTCAGAAGT TCACCCTTGT GCTGGTTTCA TCTCTTAATC CTGATGGAAC ACCAGACACT GGCTATTATA
CACAGATCAA TCGACAATCA CTGGCCAACA ATTTTGAATA TGTCATGTAT GGGAAGCTCT ACAGGATAAC AGAGGCTTCT
GGGCGTGAAA AGGCGGAGCT AAATATTTCA TTTGGTGGGC TTCTGATGCT GCTGAAGGGA GATACCTCTC ATTGCAACAA
ATTTGAGCTT GATCAGAGGT TGTATCTTCT TATAAGGAAA GTCTGAAAAT TGTATTTAAA AGAATGGAGG ATGTGAATCC
TTGTTGTGGC AAAAGCACAG CAGCTACTTC CAACTTAAAA AGAAACGAGC ATCTCTACTA TGAGTCTCAA ATTTACTATT
TAGGTGTTAT AACAAATTGT ATTGGTTCAT GTTGACGAGA GTTTTAAAAT TAAGACTTGC TACTTGTATA AGACTTTAGA
TTTTAAAAAT TAAAAAAAAA TATGATTCTT ATTAGACTTT AAAAATGTTT TAAAAGTAGT GTAACATTAT GAGAGACTTG
AAAGTAAAAT AATATTTCAT GTTAATGTTT TATAGGATTT TTGTATCGGC GATGCTGTCA CAAATACCAT TATTTTGTCC
TTGGTGTTTT TGAGTTCCGG CTTTGGAGAC ACTCTTATTC CTTTGTTTAT GCTTTTGTGT CATGGTTCCT ATTGGCTTAT
AAAAGTTATT TCATTTGTGT TCTCATCAAG AATCTTATAA TTTCAAGGTT CTTCTTGGCT TATGAAGATT TTTTTTATTA
TTTACCTATC ACAACTCTTT TCAATTTATC AAAATCGTTT GTGTTTCTTG TTTGGCTATG AAGGCACTTT CTTTTACGAG
AACTTAAGAA GGCACTTATT AATGGTAGCC CATCAAGGCC ATTCTCTTCT ATTTGTCTGT ATCAAGCTCA TTTCATTGTG
TTTACTTATT AATGCTCGTC ACAGCCACAC ACTCTGATTT TAGTGTTCAT CTTTATGTTT TGG

>Vigan.08G343600.01
ATGGTGGAGA ATAATCTCTT CGAGGATATT TTCAGAGTAG AAAAACTAAA CCCCGATGAC AAAAAATTAT TCGATAAAGT
TACTCGAATT GAAGCAAGAA GTGAAAAGTT TGACATGTTT ATGCACCTTG ATATCAATTC TGAGATATAT CCATTAAAGG
TTGGTCAGAA GTTCACCCTT GTGCTGGTTT CATCTCTTAA TCCTGATGGA ACACCAGACA CTGGCTATTA TACACAGATC
AATCGACAAT CACTGGCCAA CAATTTTGAA TATGTCATGT ATGGGAAGCT CTACAGGATA ACAGAGGCTT CTGGGCGTGA
AAAGGCGGAG CTAAATATTT CATTTGGTGG GCTTCTGATG CTGCTGAAGG GAGATACCTC TCATTGCAAC AAATTTGAGC
TTGATCAGAG GTTGTATCTT CTTATAAGGA AAGTCTGA

>Vigan.08G343600.01
MVENNLFEDI FRVEKLNPDD KKLFDKVTRI EARSEKFDMF MHLDINSEIY PLKVGQKFTL VLVSSLNPDG TPDTGYYTQI
NRQSLANNFE YVMYGKLYRI TEASGREKAE LNISFGGLLM LLKGDTSHCN KFELDQRLYL LIRKV*