GBrowse Details

Vigan.08G351600.01

Basic Information:
Name: Vigan.08G351600.01
Multiple alignment
Variant Information
Position: Chr08:44968395..44970655 (+ strand)
Length: 2261
Functional Information:
Description: Similar to NC domain-containing protein-related isoform 1. [XP_007027973.1, Theobroma cacao]
InterPro: Endopeptidase, NLPC/P60 domain (IPR000064)
LRAT-like domain (IPR007053)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:59.06,62.02,30.56,14.44,13.64,34.05,28.55,17.09
Arabidopsis thaliana homolog: AT5G06370.1
Automatic updates:
Name: NM_001254417 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100791242 (LOC100791242), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:44968395..44968753 (+ strand)
Length: 359
Type: five_prime_UTR
Position: Chr08:44968754..44968773 (+ strand)
Length: 20
Type: CDS
Position: Chr08:44968922..44968995 (+ strand)
Length: 74
Type: CDS
Position: Chr08:44969659..44970359 (+ strand)
Length: 701
Type: CDS
Position: Chr08:44970360..44970655 (+ strand)
Length: 296
Type: three_prime_UTR


>Vigan.08G351600.01
CATTGATTTG CGTGATATTG GGCTGAAAAA CCCATCCTTA AAGCCCACCT TATTGGACCT TACGCAAACA GCAAGTTGGC
ACATGTTGCT AATCTCAATG TTTTCCATCA CTACACACGT GGACAAGTTG CACAGGTGTA CAACTTCCAA TAAATGAAAG
CGTTATATTA GCGTGTTGTT GTTTCAAGTT TCAGCGTCTT CAACGCCATT TCAACCCTCA CATTCCTTAA CAGCGAAGCC
ATCGCCGAAG GGCACAATCG TCATTGCATC ACCGTCCGTT TCTTCGGTTC CTTTCACTGT TAAGGATAAG AATCGAAGCC
TCTCCCCTTC TGCTCGGAAA GGGAACAACG GTAACGGACA TGGGGCTTCT CTCGAACAGA GTAACCAGAG AGAGCCTGAA
ACCAGGGGAT CATATCTACT CTTGGAGGAC TGCGTACATT TATGCTCATC ACGGCATTTA TGTGGGTGAT GACAAAGTCA
TTCACTTCAC CAGGCGTGGG CAAGAAGTAG GTACTGGTAC TGCACTAGAT CTTCTCCTCG TTAGTTCAGG ACCAGCCAGG
GCTAGAGAAA GTTGCCCAAC ATGTACAGCA CCCCAAGAGG AACATGGTGT TATCTCCTCC TGCCTGAATT GTTTCCTAGC
CGGTGGCGTC CTGTATCGGT TTGAGTATGC CGTTTCCCCT GCCCTCTTCC TTGCAAAAGC TCGCGGTGGA ACGTGTACTC
TTGCAGTCTC CGATGAAGAT GATATCGTGG TCCACCGGGC AAAACATCTA CTTGAAAATG GCTTTGGGTG CTATAATGTT
TTCAAGAACA ACTGTGAAGA CTTTGCTATC TATTGCAAAA CTGAACTCCT GGTTGCTGAG CAAGGAAGAA TTGGACAAAG
TGGCCAAGCT ATTTCCATCA TTGGGGGCCC TCTTGCTGCT GTTCTATCCT CGCCTCTACG AATGGTTACT ACCAACGTAT
ATGGAATGGC AGTGACAGCC GTTGGAGTGT ACTGTGCCAG TAGATATGCT ACAGACATTG GAATGAGGGG TGATGTGGTG
AAGGTTCCAG TTGAAGAGTT AACAAGGAGA TTGGCCACTG GCCTTCTGCA GGTGGTTGAA TCCCAAATGC CAATGAACCT
TGCTCATCAA TCTCCTCAAC TTGTCACTCA CTGATCGAGC ATCGTCTCTG TTTAAATATT CGGCTAAGAT TAAAAAGCTT
AATTGAATGG TATTGTGGAA TTGCATAAAT TATTTTGCTG GTTGAACTTG TCTTTTGTGT CTCACTAATT TATACAATTA
GGACATAAAT GGTGATGGGA GGGGATATCT ATGAATATGG TTTGTTATTT ACACATCTCA TCTTAAATTC CAGTACAATT
TTGGCGTTAT GATGCACCAA AACTATAAGC CATATTATGA CCAAGAATTT TGGGGTCAGA ATGATGCACA CAATTCAGAG
ACTTAAAAAC 

>Vigan.08G351600.01
ATGGGGCTTC TCTCGAACAG AGTAACCAGA GAGAGCCTGA AACCAGGGGA TCATATCTAC TCTTGGAGGA CTGCGTACAT
TTATGCTCAT CACGGCATTT ATGTGGGTGA TGACAAAGTC ATTCACTTCA CCAGGCGTGG GCAAGAAGTA GGTACTGGTA
CTGCACTAGA TCTTCTCCTC GTTAGTTCAG GACCAGCCAG GGCTAGAGAA AGTTGCCCAA CATGTACAGC ACCCCAAGAG
GAACATGGTG TTATCTCCTC CTGCCTGAAT TGTTTCCTAG CCGGTGGCGT CCTGTATCGG TTTGAGTATG CCGTTTCCCC
TGCCCTCTTC CTTGCAAAAG CTCGCGGTGG AACGTGTACT CTTGCAGTCT CCGATGAAGA TGATATCGTG GTCCACCGGG
CAAAACATCT ACTTGAAAAT GGCTTTGGGT GCTATAATGT TTTCAAGAAC AACTGTGAAG ACTTTGCTAT CTATTGCAAA
ACTGAACTCC TGGTTGCTGA GCAAGGAAGA ATTGGACAAA GTGGCCAAGC TATTTCCATC ATTGGGGGCC CTCTTGCTGC
TGTTCTATCC TCGCCTCTAC GAATGGTTAC TACCAACGTA TATGGAATGG CAGTGACAGC CGTTGGAGTG TACTGTGCCA
GTAGATATGC TACAGACATT GGAATGAGGG GTGATGTGGT GAAGGTTCCA GTTGAAGAGT TAACAAGGAG ATTGGCCACT
GGCCTTCTGC AGGTGGTTGA ATCCCAAATG CCAATGAACC TTGCTCATCA ATCTCCTCAA CTTGTCACTC ACTGA

>Vigan.08G351600.01
MGLLSNRVTR ESLKPGDHIY SWRTAYIYAH HGIYVGDDKV IHFTRRGQEV GTGTALDLLL VSSGPARARE SCPTCTAPQE
EHGVISSCLN CFLAGGVLYR FEYAVSPALF LAKARGGTCT LAVSDEDDIV VHRAKHLLEN GFGCYNVFKN NCEDFAIYCK
TELLVAEQGR IGQSGQAISI IGGPLAAVLS SPLRMVTTNV YGMAVTAVGV YCASRYATDI GMRGDVVKVP VEELTRRLAT
GLLQVVESQM PMNLAHQSPQ LVTH*