GBrowse Details

Vigan.08G356000.01

Basic Information:
Name: Vigan.08G356000.01
Multiple alignment
Variant Information
Position: Chr08:45543552..45547987 (+ strand)
Length: 4436
Functional Information:
Description: Similar to Uncharacterized protein. [I1LAR9, Glycine max]
GO: Biological Process: translational initiation (GO:0006413)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: translation initiation factor activity (GO:0003743)
InterPro: Translation Initiation factor eIF- 4e (IPR001040)
Eukaryotic translation initiation factor 4E (eIF-4E), conserved site (IPR019770)
Translation Initiation factor eIF- 4e-like domain (IPR023398)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:101.00,81.40,51.51,46.25,82.69,105.19,73.88,53.51
Arabidopsis thaliana homolog: AT5G35620.1
Automatic updates:
Name: EF571285 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris cultivar Stringless Green Refugee eukaryotic translation initiation factor iso4E (eIFiso4E) mRNA, complete cds.
PubMed ID: 20447274 NCBI(pubmed)
Status: Known Variant
Name: EF571286 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris cultivar Widusa eukaryotic translation initiation factor iso4E (eIFiso4E) mRNA, complete cds.
PubMed ID: 20447274 NCBI(pubmed)
Status: Known Variant
Name: EF571287 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris cultivar Raven eukaryotic translation initiation factor iso4E (eIFiso4E) mRNA, complete cds.
PubMed ID: 20447274 NCBI(pubmed)
Status: Known Variant
Name: NM_001253075 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 4E-2-like (LOC100781892), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001369149 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 4E (LOC100781892), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:45543552..45543635 (+ strand)
Length: 84
Type: five_prime_UTR
Position: Chr08:45543636..45543814 (+ strand)
Length: 179
Type: CDS
Position: Chr08:45544384..45544558 (+ strand)
Length: 175
Type: CDS
Position: Chr08:45544657..45544782 (+ strand)
Length: 126
Type: CDS
Position: Chr08:45547234..45547299 (+ strand)
Length: 66
Type: CDS
Position: Chr08:45547380..45547427 (+ strand)
Length: 48
Type: CDS
Position: Chr08:45547428..45547987 (+ strand)
Length: 560
Type: three_prime_UTR


>Vigan.08G356000.01
TTTGGGTCAG TGCAAACAAA CACAAAGCCC TAAAAGCCTA ACCTCACTCT TCTTAGCGTT GCTAAGAGAC AAAGAGAGAG
AAAAATGGCA ACAAGCGAAG AAGTTGTTGC GGCGGCTCCG GCGCCGGAGG CAGGGCTGAA GCACAAGCTG GAGCGAAAAT
GGACGTTTTG GTGCGACAAT CAATCCAAAC CTAAACAGGG CGCTGCTTGG GGAACCTCTC TGCGCAAGGT CTACACTTTC
GACACTGTAG AAGAGTTCTG GTGTTTGTAT GATCAGATAT TTAAGCCCAA GGATTTGCAA AACAACGCCG ATTTTCACTT
GTTCAAGACT GGTATTGAAC CTAAGTGGGA AGATCCTGAG TGTGCCAATG GAGGAAAGTG GACTGTCACC AGCAACATTG
GCAGGAAGGA TAACCTTGAG AAGATGTGGC TTGAAACTCT GATGGCGTTG ATTGGGGAGC AATTTGAGGA TGCTGAGGAC
ATATGCGGTG TGGTTGCTAG CGTGCGCCAA TGGCAAGACA AACTTTCACT GTGGACAAAG ACAGCGGCAA ATGAGGCTGC
CCAGATGAGT ATTGGAAGGA AGTGGAAGGA AATCATTGAT GTTAACGACA AGATAACATA CAACTTTCAT GATGACTCTA
GAACCAAAGG AGCAACAAAG GGTCGATACA CCGTATAAAC AGTGTTGGAG CATCTTCTTG CACTTGTGCT GGAAGGCTTG
TAGTACTGAT ACCTTCATCA TGTGTCATAT GTACTAGATC ATGCTACTTC ATTGGTGGAG GGCTTGGCTT TACTTTTGTT
CATTCACCCC ACTTTGGGGT GTTGATACTA TTGTACTCTT CCTCATTTTT TAAATGGCCT GTCAAATTTT TCTGCAGAGT
TAATTGTAGT TTTTGTATGT CACGTTATTA AAGCTTTAAA TCTTGAAATA TGTGGAGTCC AGTTTAGGAT GAGTTTGATG
TGTTGCTTGT ACAATTATAA TGGAGAAGTA AACCATTATT GTTCTGTTCA GTGTGTAACC CTGAGCTAAA ATAAGATGAA
CTCATGCTTC AACAAGTTCA AATATAAGAA ACATATAATG GTGAGACATA GTAAGGGAGA TTCCTGTATA AACACAACAG
GGGGAAATTA GGTATGTTTT TATTTTCATT AACTATAATT TTGGATAACA AAATTTGTAT TCCAAAGTTG TAGCTTAATT
TACATAATTT TTTAGTGTAT TTTTATCGCT AAATTACC

>Vigan.08G356000.01
ATGGCAACAA GCGAAGAAGT TGTTGCGGCG GCTCCGGCGC CGGAGGCAGG GCTGAAGCAC AAGCTGGAGC GAAAATGGAC
GTTTTGGTGC GACAATCAAT CCAAACCTAA ACAGGGCGCT GCTTGGGGAA CCTCTCTGCG CAAGGTCTAC ACTTTCGACA
CTGTAGAAGA GTTCTGGTGT TTGTATGATC AGATATTTAA GCCCAAGGAT TTGCAAAACA ACGCCGATTT TCACTTGTTC
AAGACTGGTA TTGAACCTAA GTGGGAAGAT CCTGAGTGTG CCAATGGAGG AAAGTGGACT GTCACCAGCA ACATTGGCAG
GAAGGATAAC CTTGAGAAGA TGTGGCTTGA AACTCTGATG GCGTTGATTG GGGAGCAATT TGAGGATGCT GAGGACATAT
GCGGTGTGGT TGCTAGCGTG CGCCAATGGC AAGACAAACT TTCACTGTGG ACAAAGACAG CGGCAAATGA GGCTGCCCAG
ATGAGTATTG GAAGGAAGTG GAAGGAAATC ATTGATGTTA ACGACAAGAT AACATACAAC TTTCATGATG ACTCTAGAAC
CAAAGGAGCA ACAAAGGGTC GATACACCGT ATAA

>Vigan.08G356000.01
MATSEEVVAA APAPEAGLKH KLERKWTFWC DNQSKPKQGA AWGTSLRKVY TFDTVEEFWC LYDQIFKPKD LQNNADFHLF
KTGIEPKWED PECANGGKWT VTSNIGRKDN LEKMWLETLM ALIGEQFEDA EDICGVVASV RQWQDKLSLW TKTAANEAAQ
MSIGRKWKEI IDVNDKITYN FHDDSRTKGA TKGRYTV*