GBrowse Details

Vigan.08G356000.01

Basic Information:
Name: Vigan.08G356000.01
Multiple alignment
Variant Information
Position: Chr08:45543552..45547987 (+ strand)
Length: 4436
Functional Information:
Description: Similar to Uncharacterized protein. [I1LAR9, Glycine max]
GO: Biological Process: translational initiation (GO:0006413)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: translation initiation factor activity (GO:0003743)
InterPro: Translation Initiation factor eIF- 4e (IPR001040)
Eukaryotic translation initiation factor 4E (eIF-4E), conserved site (IPR019770)
Translation Initiation factor eIF- 4e-like domain (IPR023398)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:101.00,81.40,51.51,46.25,82.69,105.19,73.88,53.51
Arabidopsis thaliana homolog: AT5G35620.1
Automatic updates:
Name: EF571285 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris cultivar Stringless Green Refugee eukaryotic translation initiation factor iso4E (eIFiso4E) mRNA, complete cds.
PubMed ID: 20447274 NCBI(pubmed)
Status: Known Variant
Name: EF571286 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris cultivar Widusa eukaryotic translation initiation factor iso4E (eIFiso4E) mRNA, complete cds.
PubMed ID: 20447274 NCBI(pubmed)
Status: Known Variant
Name: EF571287 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris cultivar Raven eukaryotic translation initiation factor iso4E (eIFiso4E) mRNA, complete cds.
PubMed ID: 20447274 NCBI(pubmed)
Status: Known Variant
Name: NM_001253075 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 4E-2-like (LOC100781892), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001369149 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 4E (LOC100781892), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:45543552..45543635 (+ strand)
Length: 84
Type: five_prime_UTR
Position: Chr08:45543636..45543814 (+ strand)
Length: 179
Type: CDS
Position: Chr08:45544384..45544558 (+ strand)
Length: 175
Type: CDS
Position: Chr08:45544657..45544782 (+ strand)
Length: 126
Type: CDS
Position: Chr08:45547234..45547299 (+ strand)
Length: 66
Type: CDS
Position: Chr08:45547380..45547427 (+ strand)
Length: 48
Type: CDS
Position: Chr08:45547428..45547987 (+ strand)
Length: 560
Type: three_prime_UTR

>Vigan.08G356000.01 class=Sequence position=Chr08:45543552..45547987 (+ strand)
TTTGGGTCAG TGCAAACAAA CACAAAGCCC TAAAAGCCTA ACCTCACTCT TCTTAGCGTT GCTAAGAGAC AAAGAGAGAG
AAAAATGGCA ACAAGCGAAG AAGTTGTTGC GGCGGCTCCG GCGCCGGAGG CAGGGCTGAA GCACAAGCTG GAGCGAAAAT
GGACGTTTTG GTGCGACAAT CAATCCAAAC CTAAACAGGG CGCTGCTTGG GGAACCTCTC TGCGCAAGGT CTACACTTTC
GACACTGTAG AAGAGTTCTG GTGGTATATA TTTTTCTCTT CCTTCTCCGT TTTGCTTTCC CCCGATTTTA ATTTTTTAAA
ATTTTTCCTT TTTCATGGAA TCTTATTTTT TTTCATTTTA TTTTAGAAGA ATGGAATCTG AACCCGCAAT CTGTAATCTT
AAGTTTTATC GATTATTATC AGGGGCTGGA TTGATTAATT TAAAAAAAAA TGATTTTTAC GGATCTTAGG AGAGAAACCC
GTAAAGGGTC TGATTTTTTG TTGCTAACAC GAGGGTTTAT GGCTTTTATG TTTTTCATTG TTATTAAGTT TAGTTATGTT
TGTAGTTCTC CTAAATGAGT AAAATTTTGA TTTTGGTCAA TTAAGAATAT TTTCTTTGTT TTTTCGTCCC TTTAAACTTG
GAAATCACTG CATTTGATCT TTACTATTAT CTATATACTG ATTTAAAATT TTGGAGGATG AAAATTAAAG AAAATTTAGA
AGGATAAAAA CTTATTATTA TTATTTGGAG AATGAGTTGA ATGTTGTTGA TTTTGGGTTT GGTGGTAAAA CTATTGGGAG
GAATGCCTTT GATGTGAAAA ATGTTGGTGT AGTTTGTATG ATCAGATATT TAAGCCCAAG GATTTGCAAA ACAACGCCGA
TTTTCACTTG TTCAAGACTG GTATTGAACC TAAGTGGGAA GATCCTGAGT GTGCCAATGG AGGAAAGTGG ACTGTCACCA
GCAACATTGG CAGGAAGGAT AACCTTGAGA AGATGTGGCT TGAAACTGTA ATTTTTTATT TTATTTTATC GCCAATTGCT
TTTGTTTTTG GGTTTGTGAA ATGTGGGGAG ATCCGGTGTT AAATTGTGAT TGTTCTTCTG AATAGCTGAT GGCGTTGATT
GGGGAGCAAT TTGAGGATGC TGAGGACATA TGCGGTGTGG TTGCTAGCGT GCGCCAATGG CAAGACAAAC TTTCACTGTG
GACAAAGACA GCGGCAAATG AGGCTGCCCA GGTTTGTTAT TTTCTTTTAA ATGGTACTTG CAAGTTGCCA TTGCAACTTA
TATTTATGTT CTGTTATCTT GTCTGCTTAC TATTCCTATT GTGAGTCAGG ATGATTAAGG CCTTGACACA TCAATAGAAG
TTATGATTGG ATTCTCTAAT TTCTGGTCTT GTGTTCAAAT TATAACTCAA TTTGCTCCTA TCTAGAATGC TTTCATTGCT
TCATTGGAAT GCATCAAATG TTTAAATTTT GCACCACACT TTCACTACGG ATGTTTTGCT ACTACATTCC AGTTTATTGT
TTGCTTATTA AAGAAGAAAC TAAAGTATTT TTTTCCTTTC CTTTTCTTCT CCACGAGAGT ATTTTGTCAT CTTAGTTCCT
TTGCAAGGCA TAGATGATAG ATAAGCACAA TTCTATATTT CATGTGCTTT GGTATTTTTC TGTCAACTGT AACTTGAACC
TTGTTTCCAA TTCAGTAGGG ATGAAATTGT AAATTTCCCT GCTATTGATC AATACTACCA TGGTGCATCC CTTCAACCTG
TCCCAGAACT TTAGAGACTT TCATGCTGTA AACCCAACAA TTGTATCCTG CAGTAACCCG ATTTTTAACC AATCCTCCAT
TGCCATACCT TTTGTATACT GGTTTTCTTC CCCTTCACAT CCCAATATCA AAAAATTTAA TCATGTATTC TTAAAAAGTA
CAAACATAAC TAGGACCATA TTTCTTGTCA CATCAATAAC ACTCCATCTT TTGACCTTTT CTCGCACTTT AGCACGAGTC
AATCTGGTTT CTTTCTTGTG TTGTGTTAGA TGTAATGCTG CCACATTTTT AACTTATAAC TGTGAGTTTT GGGAAGTTGA
ATTTCCATTT TCATCTCTTT TAGCTGTTTG CCATTTCCCT CTATAGTGCT GTTACTTTTG GCCACTGCCA TGTTTTTCTT
CTCCAAGATG CATGCTATAA TTTCTTCTCT TAACCCATTG GAAAATATTC CCGTAATATT CTGGTCATCA AGCTCTTTCA
TCACTCTTGC TAGTCTTTCA AATTGGGTGA TTAATTCACC CACTATCTGC TTGTTTCAGG GTTAACAGAG ATTCTAAAGG
ATCACCCCAT CAAGATTAGT TGAACCTTCT CAATTGGGGT AGTCTTGAAT CCTTCCCAAC TTTGATTTGA ACTGTAAGTT
TCTCACCATT GAGACCATGG CAACACATCT CCTTTGAGAG TCACCATCAT TGCCTGTCTT TTCCTGCTCC ACTAAATCCA
AAATAGCACT CAAATTTCAC TATGCATCCT AAAACATCCT CCACTTAAAG ATGGGTATTT CAAGCTTCGT CCAGTTGATC
CCTTTCACTG GTTCAGGTTG CGTGCTTGCA TATTTGCCTT GGACTTCCCT CCATCATCTA CCTTCATGTT AGCCTCCCGT
TAGGGTCTTC TGTTATTGAA CCTTTTCTAG GCATTGCAGA CACCAACGTG TCCCCACCTA TTGCAGACAT ATCGATGCAT
GAATCTGACT GACTGAATCT TGCTTCTGAT CGTGTCTCTA GTCCTTCTTG CAACTGACTC CGGATCTTCA CCACCCTCTC
CAAAGCCTCC AGCTCTCCTC CATTCAGGAT TGTATGCCTG GAGCTTTTCT TGACCCACTC TTTACAAACC TTTGTCTTTT
ATATTTATAT ATTTGGACTA CAAGCAATCT GCCCGAGTCA GAAACTAACT ATCTAGCTAA CCTCATCAAG TTATTTACGT
AATTGTATCT TTTTTGTGCT TTATCAAACT TGAGATTAAA ACAGATAAAT ATATTTCTGG AGGACTTACG AGATTCTTCT
CACAATCTTC TATTTATAAT GAAAAACTGA TACTAAAAGT TCATTGAAGA TTAAGGGACT GTACTAGACA TCTAGGTGAA
GAACTAGGTA TGACTATAGG TTACAACTAA TAAATTGTCT AGCACATTAC ACCCTACTTA GGCTTAATGA TGATACATAA
ATGTAATTAT TCGAACAATC AAGATACCCA TTTTTTGTTG AATGTTTTAT ATAATGTTGT GACATTGTAT AAAATACTCT
ACAAAAAAAT AAACCTAAAT TTGACTTTAT GGTTTTAGAG GAATAAACGA GATCCATGGC CAGTGATCTA TAATTTTTAG
GAAGGTTAGC TACTAAAATG GAAATATTGC TAATAGATAC TAATAGATGG TGTGCTTGAT ATGAGCGAAA TATTGCTGGA
AATGATCGAC TGTAAATTCT TGCTTATCTT TCTACTTCAA CTGGGATCTA CAATTTATAC TGAATGGCAA AGTCTGGAAT
GTGTAAATGT ATCAGTCTAA GATCCAGAAT TGTAATTTGC TATTCTAAGC AAGTGCAAAT TCCTTGCCAA AATGTCATGT
TCATTTATAT TTTTTTGACT CATCCAATAC TCAGCATGAC ATTTGAAATG AGCCATTTTT GTCGTTGACT TTAATTTTGC
AGATGAGTAT TGGAAGGAAG TGGAAGGAAA TCATTGATGT TAACGACAAG ATAACATACA ACTTTCATGT AAAACCTTTG
CTCATAAATT TTGATTGGTG AATGTGATTC ATAAACAACT ATGATTCTTA CATCTCTAGT TATTACAGGA TGACTCTAGA
ACCAAAGGAG CAACAAAGGG TCGATACACC GTATAAACAG TGTTGGAGCA TCTTCTTGCA CTTGTGCTGG AAGGCTTGTA
GTACTGATAC CTTCATCATG TGTCATATGT ACTAGATCAT GCTACTTCAT TGGTGGAGGG CTTGGCTTTA CTTTTGTTCA
TTCACCCCAC TTTGGGGTGT TGATACTATT GTACTCTTCC TCATTTTTTA AATGGCCTGT CAAATTTTTC TGCAGAGTTA
ATTGTAGTTT TTGTATGTCA CGTTATTAAA GCTTTAAATC TTGAAATATG TGGAGTCCAG TTTAGGATGA GTTTGATGTG
TTGCTTGTAC AATTATAATG GAGAAGTAAA CCATTATTGT TCTGTTCAGT GTGTAACCCT GAGCTAAAAT AAGATGAACT
CATGCTTCAA CAAGTTCAAA TATAAGAAAC ATATAATGGT GAGACATAGT AAGGGAGATT CCTGTATAAA CACAACAGGG
GGAAATTAGG TATGTTTTTA TTTTCATTAA CTATAATTTT GGATAACAAA ATTTGTATTC CAAAGTTGTA GCTTAATTTA
CATAATTTTT TAGTGTATTT TTATCGCTAA ATTACC

>Vigan.08G356000.01
TTTGGGTCAG TGCAAACAAA CACAAAGCCC TAAAAGCCTA ACCTCACTCT TCTTAGCGTT GCTAAGAGAC AAAGAGAGAG
AAAAATGGCA ACAAGCGAAG AAGTTGTTGC GGCGGCTCCG GCGCCGGAGG CAGGGCTGAA GCACAAGCTG GAGCGAAAAT
GGACGTTTTG GTGCGACAAT CAATCCAAAC CTAAACAGGG CGCTGCTTGG GGAACCTCTC TGCGCAAGGT CTACACTTTC
GACACTGTAG AAGAGTTCTG GTGTTTGTAT GATCAGATAT TTAAGCCCAA GGATTTGCAA AACAACGCCG ATTTTCACTT
GTTCAAGACT GGTATTGAAC CTAAGTGGGA AGATCCTGAG TGTGCCAATG GAGGAAAGTG GACTGTCACC AGCAACATTG
GCAGGAAGGA TAACCTTGAG AAGATGTGGC TTGAAACTCT GATGGCGTTG ATTGGGGAGC AATTTGAGGA TGCTGAGGAC
ATATGCGGTG TGGTTGCTAG CGTGCGCCAA TGGCAAGACA AACTTTCACT GTGGACAAAG ACAGCGGCAA ATGAGGCTGC
CCAGATGAGT ATTGGAAGGA AGTGGAAGGA AATCATTGAT GTTAACGACA AGATAACATA CAACTTTCAT GATGACTCTA
GAACCAAAGG AGCAACAAAG GGTCGATACA CCGTATAAAC AGTGTTGGAG CATCTTCTTG CACTTGTGCT GGAAGGCTTG
TAGTACTGAT ACCTTCATCA TGTGTCATAT GTACTAGATC ATGCTACTTC ATTGGTGGAG GGCTTGGCTT TACTTTTGTT
CATTCACCCC ACTTTGGGGT GTTGATACTA TTGTACTCTT CCTCATTTTT TAAATGGCCT GTCAAATTTT TCTGCAGAGT
TAATTGTAGT TTTTGTATGT CACGTTATTA AAGCTTTAAA TCTTGAAATA TGTGGAGTCC AGTTTAGGAT GAGTTTGATG
TGTTGCTTGT ACAATTATAA TGGAGAAGTA AACCATTATT GTTCTGTTCA GTGTGTAACC CTGAGCTAAA ATAAGATGAA
CTCATGCTTC AACAAGTTCA AATATAAGAA ACATATAATG GTGAGACATA GTAAGGGAGA TTCCTGTATA AACACAACAG
GGGGAAATTA GGTATGTTTT TATTTTCATT AACTATAATT TTGGATAACA AAATTTGTAT TCCAAAGTTG TAGCTTAATT
TACATAATTT TTTAGTGTAT TTTTATCGCT AAATTACC

>Vigan.08G356000.01
ATGGCAACAA GCGAAGAAGT TGTTGCGGCG GCTCCGGCGC CGGAGGCAGG GCTGAAGCAC AAGCTGGAGC GAAAATGGAC
GTTTTGGTGC GACAATCAAT CCAAACCTAA ACAGGGCGCT GCTTGGGGAA CCTCTCTGCG CAAGGTCTAC ACTTTCGACA
CTGTAGAAGA GTTCTGGTGT TTGTATGATC AGATATTTAA GCCCAAGGAT TTGCAAAACA ACGCCGATTT TCACTTGTTC
AAGACTGGTA TTGAACCTAA GTGGGAAGAT CCTGAGTGTG CCAATGGAGG AAAGTGGACT GTCACCAGCA ACATTGGCAG
GAAGGATAAC CTTGAGAAGA TGTGGCTTGA AACTCTGATG GCGTTGATTG GGGAGCAATT TGAGGATGCT GAGGACATAT
GCGGTGTGGT TGCTAGCGTG CGCCAATGGC AAGACAAACT TTCACTGTGG ACAAAGACAG CGGCAAATGA GGCTGCCCAG
ATGAGTATTG GAAGGAAGTG GAAGGAAATC ATTGATGTTA ACGACAAGAT AACATACAAC TTTCATGATG ACTCTAGAAC
CAAAGGAGCA ACAAAGGGTC GATACACCGT ATAA

>Vigan.08G356000.01
MATSEEVVAA APAPEAGLKH KLERKWTFWC DNQSKPKQGA AWGTSLRKVY TFDTVEEFWC LYDQIFKPKD LQNNADFHLF
KTGIEPKWED PECANGGKWT VTSNIGRKDN LEKMWLETLM ALIGEQFEDA EDICGVVASV RQWQDKLSLW TKTAANEAAQ
MSIGRKWKEI IDVNDKITYN FHDDSRTKGA TKGRYTV*