VIGGS:GBrowse

Vigan.08G356100.01

Basic Information:

Name:	Vigan.08G356100.01 Multiple alignment Variant Information
Position:	Chr08:45548667..45550324 (- strand)
Length:	1658

Functional Information:

Description:	Similar to Uncharacterized protein. [G7I6M5, Medicago truncatula]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:68.45,31.16,56.42,573.72,4.73,39.94,4.09,118.37
Arabidopsis thaliana homolog:	AT2G05620.1

Automatic updates:

Name:	NM_001248370 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500247 (LOC100500247), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001254433 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein PROTON GRADIENT REGULATION 5, chloroplastic-like (LOC100782797), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:45548667..45548965 (- strand)
Length:	299
Type:	three_prime_UTR

Position:	Chr08:45548966..45549070 (- strand)
Length:	105
Type:	CDS

Position:	Chr08:45549767..45550042 (- strand)
Length:	276
Type:	CDS

Position:	Chr08:45550043..45550324 (- strand)
Length:	282
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G356100.01
TCATATTTGA GTTGTGGAAT TTCATAATTA AGCACAAAAA ACTAAAATTC AAAGCCACCA ATATGTGTGG CTCCAAATGC
TTCTATGTTG TGAATCACAC TAAAGTCCAA TTTCAAACCA CTGGCTCTCC AATTTACACA CAAATATCCC TTCCTTCACA
AGCACAATAT AAGCCATTAG AGCCATCTAT CTCAAGCTCC AACAAGAGGC TAAAAACAAA GCAAAAGAAT CTCTACCTTC
ATTATATTCA CACAACAAAA TCACAGAGAG CATAACCAAA AAATGGCTAC TTCACTTTCT ACAACTGGGT GTGTTGGTTC
TTCCTTCTAT GGAAGTTGGG GCACTTCAAT TGTTGGTGAG GACTACACCT TGTTGGCCAA GTCAGTGCCG TCACAGGTTC
GCATCGGAAG GGGAAAGCCA GTGAGATTGC AGCCAATGAT GAAGAATATC AATGAAGGGA AGGGTATCTT TGCACCTCTT
GTTGTGGTCA CTCGAAACAT TGTTGGCAAG AAGCGTTTCA ACCAGCTTAG AGGCAAAGCA ATTGCTCTGC ACTCTCAGGT
AATCACGGAA TTTTGCAAAT CAATAGGAGC AGATGGAAAA CAGAGACAAG GGTTGATCAG GTTGGCTAAG AAGAATGGAG
AATGGCTTGG GTTTCTTGCA TGATAGATTA GCAAAATGTT CCTCATATTT TGTAATTACC ATGTGAGAAA GTATCAAGTT
TGAACTTGGT GGTTTTCAAT TGACAGAAGA ATGTAAACTA GGAACAAATC TCTCTCTAGT TGTGACTTTT CATTCTCAAG
TATTGTTCTC TTATTTTGTC CTCTAGATAC ATGAAGTATA TTATAAAACC AGAGGTGATC TACATATCAA CGTTGATACA
ATGAACAAAG CAATGCCACT ATACAGCATA TTTTTCACAA CTTTTCTGCT GCTTGTTTTT GTCAACCATT TGAGTAAAAA
GT

[show][hide][copy]CDS

>Vigan.08G356100.01
ATGGCTACTT CACTTTCTAC AACTGGGTGT GTTGGTTCTT CCTTCTATGG AAGTTGGGGC ACTTCAATTG TTGGTGAGGA
CTACACCTTG TTGGCCAAGT CAGTGCCGTC ACAGGTTCGC ATCGGAAGGG GAAAGCCAGT GAGATTGCAG CCAATGATGA
AGAATATCAA TGAAGGGAAG GGTATCTTTG CACCTCTTGT TGTGGTCACT CGAAACATTG TTGGCAAGAA GCGTTTCAAC
CAGCTTAGAG GCAAAGCAAT TGCTCTGCAC TCTCAGGTAA TCACGGAATT TTGCAAATCA ATAGGAGCAG ATGGAAAACA
GAGACAAGGG TTGATCAGGT TGGCTAAGAA GAATGGAGAA TGGCTTGGGT TTCTTGCATG A

[show][hide][copy]PROTEIN

>Vigan.08G356100.01
MATSLSTTGC VGSSFYGSWG TSIVGEDYTL LAKSVPSQVR IGRGKPVRLQ PMMKNINEGK GIFAPLVVVT RNIVGKKRFN
QLRGKAIALH SQVITEFCKS IGADGKQRQG LIRLAKKNGE WLGFLA*