GBrowse Details

Vigan.08G359900.01

Basic Information:
Name: Vigan.08G359900.01
Multiple alignment
Variant Information
Position: Chr08:45924574..45926711 (+ strand)
Length: 2138
Functional Information:
Description: Similar to Serine/threonine-protein phosphatase. [V7BIQ6, Phaseolus vulgaris]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: Phosphoesterase domain (IPR004843)
Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.65,0.10,10.15,2.98,0.22,6.05,1.11,4.77
Arabidopsis thaliana homolog: AT2G39840.1, AT5G43380.1
Automatic updates:
Name: NM_001255736 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max serine/threonine-protein phosphatase PP1-like (LOC100813763), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:45924574..45924666 (+ strand)
Length: 93
Type: five_prime_UTR
Position: Chr08:45924667..45924841 (+ strand)
Length: 175
Type: CDS
Position: Chr08:45925269..45925828 (+ strand)
Length: 560
Type: CDS
Position: Chr08:45925923..45926120 (+ strand)
Length: 198
Type: CDS
Position: Chr08:45926298..45926333 (+ strand)
Length: 36
Type: CDS
Position: Chr08:45926334..45926711 (+ strand)
Length: 378
Type: three_prime_UTR


>Vigan.08G359900.01
CTTATATAAG ACTCAACAAC ATAAGTTTCC TGGTCTCTGC TTTTCCCTTC TTGCATTGGT GTTCTTTGCT TTTGTTGGTT
ATCTTTGAGG GCAATGGAAC GTGGAGTTCT TGATGGCATA ATCAATAGAC TGCTTCAAGT CAGAGGGAGA CCAGGGAAAC
AGGTGCAGCT CTCAGAGGGA GAAATCAAAC AGCTTTGTAT GGTTTCTAGG GATATCTTCT TGAAGCAGCC CAATCTCTTA
GAACTTGAGG CACCAATTAA GATATGTGGA GACATCCATG GTCAATATTC TGACCTTCTA AGACTTTTTG AGCATGGTGG
TTTGCCTCCT CGCTCCAACT ACTTATTCTT AGGTGATTAT GTGGACCGTG GAAAGCAAAG TCTAGAGACA ATATGTCTTC
TTTTGGCCTA CAAGATGAAG TACCCTGAGA ACTTTTTCCT TCTTAGGGGA AACCATGAAT GTGCTTCCAT AAACCGTGTC
TATGGGTTCT ATGATGAATG TAAACGAAGA TTCAATGTCA AGCTGTGGAA AATATTCGCA GATTGCTTCA ACTGCATGCC
TGTGGCAGCC ATCATTGATG AAAAAATCTT CTGCATGCAT GGAGGACTCT CTCCCGAACT GCACAATCTA AGTCAGATAA
ACTCTTTGCC ACGTCCAACA GAAGTACCTG ACAGTGGTCT ACTCTGTGAT CTCTTGTGGT CTGATCCTAG TAAAGACTCC
GAGGGTTGGG GAGAGAGTCA ACGTGGAGTT TCATACACTT TTGGTGCCAG CTTGGTCACA CAATTTCTTG GAAAGCATGA
TCTTGACTTG ATTTGTAGAG CACACCAGGT TGTTGAGGAT GGATATGAGT TTTTTGCTAA TAGACAACTT GTGACTATCT
TTTCTGCTCC TAACTACTGT GGAGAGTTTG ACAATGCTGG AGCTATGATG ACTGTCGATG AGACACTTAT GTGCTCTTTT
CAGATACTGA GGCCAGTGGA AAACAGAAAG CCTAAGTTTG GTTTTGGGAG CAAAACTTCA TTCAAGGCAA TTCTTGATGC
TGCAAGAGTA CGTCCTCATT GAGCTGACTT AGACCAATAA TAAAGTTTGT AACATAACTA AATTGACTTG AACAAAGTCA
CAACTCTGTT CACTTCAATG TGAAGGAAGA TTTCAACCAG CAGTGCAAGT TGAGGTCTAT GAAGAACATA GGAAAATTTA
TGTTTTCTTT TTAGTATAGC TCAATGTCTT TTTATGTGCT GGAACATTCT CATCATGTAC AATGTTGCCA CCACAATTTG
AGGGGTCAGG TTTCACTTTT CCTTTGTTTC AGTTTTTTTA TGTGAGAGAC AGTTATATGT CCACTGTTGT ATTATAAATG
GCAGCATATG CATTTTGGCT TTCTTTCCTG TTACAGCAAT TCATTGTTTC AATATGATAA CATGTTATTT GTGCTATAAA

>Vigan.08G359900.01
ATGGAACGTG GAGTTCTTGA TGGCATAATC AATAGACTGC TTCAAGTCAG AGGGAGACCA GGGAAACAGG TGCAGCTCTC
AGAGGGAGAA ATCAAACAGC TTTGTATGGT TTCTAGGGAT ATCTTCTTGA AGCAGCCCAA TCTCTTAGAA CTTGAGGCAC
CAATTAAGAT ATGTGGAGAC ATCCATGGTC AATATTCTGA CCTTCTAAGA CTTTTTGAGC ATGGTGGTTT GCCTCCTCGC
TCCAACTACT TATTCTTAGG TGATTATGTG GACCGTGGAA AGCAAAGTCT AGAGACAATA TGTCTTCTTT TGGCCTACAA
GATGAAGTAC CCTGAGAACT TTTTCCTTCT TAGGGGAAAC CATGAATGTG CTTCCATAAA CCGTGTCTAT GGGTTCTATG
ATGAATGTAA ACGAAGATTC AATGTCAAGC TGTGGAAAAT ATTCGCAGAT TGCTTCAACT GCATGCCTGT GGCAGCCATC
ATTGATGAAA AAATCTTCTG CATGCATGGA GGACTCTCTC CCGAACTGCA CAATCTAAGT CAGATAAACT CTTTGCCACG
TCCAACAGAA GTACCTGACA GTGGTCTACT CTGTGATCTC TTGTGGTCTG ATCCTAGTAA AGACTCCGAG GGTTGGGGAG
AGAGTCAACG TGGAGTTTCA TACACTTTTG GTGCCAGCTT GGTCACACAA TTTCTTGGAA AGCATGATCT TGACTTGATT
TGTAGAGCAC ACCAGGTTGT TGAGGATGGA TATGAGTTTT TTGCTAATAG ACAACTTGTG ACTATCTTTT CTGCTCCTAA
CTACTGTGGA GAGTTTGACA ATGCTGGAGC TATGATGACT GTCGATGAGA CACTTATGTG CTCTTTTCAG ATACTGAGGC
CAGTGGAAAA CAGAAAGCCT AAGTTTGGTT TTGGGAGCAA AACTTCATTC AAGGCAATTC TTGATGCTGC AAGAGTACGT
CCTCATTGA

>Vigan.08G359900.01
MERGVLDGII NRLLQVRGRP GKQVQLSEGE IKQLCMVSRD IFLKQPNLLE LEAPIKICGD IHGQYSDLLR LFEHGGLPPR
SNYLFLGDYV DRGKQSLETI CLLLAYKMKY PENFFLLRGN HECASINRVY GFYDECKRRF NVKLWKIFAD CFNCMPVAAI
IDEKIFCMHG GLSPELHNLS QINSLPRPTE VPDSGLLCDL LWSDPSKDSE GWGESQRGVS YTFGASLVTQ FLGKHDLDLI
CRAHQVVEDG YEFFANRQLV TIFSAPNYCG EFDNAGAMMT VDETLMCSFQ ILRPVENRKP KFGFGSKTSF KAILDAARVR
PH*