VIGGS:GBrowse

Vigan.08G360500.01

Basic Information:

Name:	Vigan.08G360500.01 Multiple alignment Variant Information
Position:	Chr08:45967739..45971437 (- strand)
Length:	3699

Functional Information:

Description:	Similar to Malate dehydrogenase. [T2DPK7, Phaseolus vulgaris]
GO:	Biological Process: carbohydrate metabolic process (GO:0005975)
	Biological Process: malate metabolic process (GO:0006108)
	Biological Process: cellular carbohydrate metabolic process (GO:0044262)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: malate dehydrogenase activity (GO:0016615)
	Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616)
	Molecular Function: L-malate dehydrogenase activity (GO:0030060)
InterPro:	Lactate/malate dehydrogenase, N-terminal (IPR001236)
	Malate dehydrogenase, active site (IPR001252)
	L-lactate/malate dehydrogenase (IPR001557)
	Malate dehydrogenase, type 2 (IPR010945)
	Malate dehydrogenase, NAD-dependent, cytosolic (IPR011274)
	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (IPR015955)
	NAD(P)-binding domain (IPR016040)
	Lactate/malate dehydrogenase, C-terminal (IPR022383)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:21.35,138.92,441.48,227.44,605.83,1152.66,492.40,341.79
Arabidopsis thaliana homolog:	AT1G04410.1, AT5G43330.1, AT5G56720.1

Automatic updates:

Name:	NM_001249732 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max cytosolic malate dehydrogenase (LOC547963), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001256362 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max malate dehydrogenase, cytoplasmic-like (LOC100811402), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:45967739..45968089 (- strand)
Length:	351
Type:	three_prime_UTR

Position:	Chr08:45968090..45968184 (- strand)
Length:	95
Type:	CDS

Position:	Chr08:45968552..45968663 (- strand)
Length:	112
Type:	CDS

Position:	Chr08:45968752..45968887 (- strand)
Length:	136
Type:	CDS

Position:	Chr08:45968972..45969249 (- strand)
Length:	278
Type:	CDS

Position:	Chr08:45969769..45969944 (- strand)
Length:	176
Type:	CDS

Position:	Chr08:45970059..45970217 (- strand)
Length:	159
Type:	CDS

Position:	Chr08:45971190..45971232 (- strand)
Length:	43
Type:	CDS

Position:	Chr08:45971233..45971437 (- strand)
Length:	205
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G360500.01
AAATAGTATA GTAATACTTC TCTACATTAT TTGCATATTT TACTTTAGAA GAAATATAGA GTCAAGCGGC GTCGTTCTGA
TTCGTTCTAA CCTTCTCCAC ACGAATAAAT ACCGAAGTCC ACCCTCACTC GGTCACTCAC TCCTTCAGTG TTCATTCATA
TCTTCAACCC TCTTCGTTCC TTCAATTCGT TCCATTTCTT CCAAAATGGC CAAAGACCCA GTTCGTGTTC TTGTCACAGG
CGCAGCAGGA CAAATTGGAT ATGCTCTTGT CCCTATGATT GCTAGAGGAG TGATGTTGGG TCCTGACCAG CCTGTGATCC
TCCACATGCT TGATATTCCT CCAGCAGCAG AATCATTGAA TGGGGTTAAA ATGGAATTGG TGGATGCTGC ATTCCCTCTT
CTTAAAGGTG TTGTTGCAAC AACTGATGTG GTTGAGGCAT GCACTGGTGT CAATATTGCC GTGATGGTTG GTGGATTCCC
AAGAAAAGAA GGTATGGAGA GGAAAGATGT GATGTCTAAG AATGTCTCAA TTTACAAGTC TCAGGCTTCT GCCCTTGAAA
AACATGCTGC TGCCAACTGC AAGGTTCTGG TTGTTGCTAA CCCAGCAAAC ACCAATGCAT TGATCTTGAA GGAATTTGCC
CCATCAATTC CAGAGAAAAA CATTTCTTGT TTGACTAGAT TGGATCACAA CAGGGCCCTG GGGCAAATTT CTGAAAGACT
TGGTGTTCAG GTTTCTGAAG TGAAGAATGT CATAATCTGG GGTAATCACT CATCCACTCA GTATCCCGAT GTTAACCATG
CAACTGTTAC AACCCCAGCT GGGGACAAAT CAGTCCGTGA ACTTGTTGCT GATGATGCCT GGTTGAATGG GGAGTTCATT
ACAACTGTTC AACAACGTGG TGCTGCAATT ATCAAGGCTA GAAAGCTTTC AAGTGCACTA TCAGCTGCTA GTGCTGCTTG
TGACCATATT AGAGATTGGG TTCTTGGAAC TCCTCAGGGC ACCTGGGTGT CAATGGGAGT ATATTCCGAT GGATCGTACA
ATGTTCCAGC TGGACTGATC TATTCATTCC CTGTCACTTG TGCCAATGGG GAATGGACAA TTGTCCAAGG ACTTCCAATT
GACGAGATCT CAAGGAAGAA GTTGGACTTG ACAGGAGAAG AGCTTTCTGA GGAGAAGGCA TTGGCTTACT CATGCCTCTC
GTAGACACAT TGACCATGTT TTTGCGTATA GAAGTGTAGC TTCAATTTTG AATAATTCTC CAAGACAGAA CAAAGGAAGT
ATGAGTGCAG AGAGTGTGCT TTTCATTGGC ATTACTTGTT GTTTTGCAAC ATCTAATCCT TTTAGGAGGA TATTTGAGTT
TAACAGTTTT AGTCATGGTA TTTAATATAT CATGAGCCGC ATATTTAGTT GGATTATGTG CTTTAATGGC TTCAACTTTT
TGGTGTGTTG TGGTGGCTTT ATATGTTGGA TGCACTAGCG TGCAGACGCA TACCTCAGCT CTTGTGCAAT AACGTCATCA
TCGATGCTTT TTACCTATAC CATCTTTTTC TCACA

[show][hide][copy]CDS

>Vigan.08G360500.01
ATGGCCAAAG ACCCAGTTCG TGTTCTTGTC ACAGGCGCAG CAGGACAAAT TGGATATGCT CTTGTCCCTA TGATTGCTAG
AGGAGTGATG TTGGGTCCTG ACCAGCCTGT GATCCTCCAC ATGCTTGATA TTCCTCCAGC AGCAGAATCA TTGAATGGGG
TTAAAATGGA ATTGGTGGAT GCTGCATTCC CTCTTCTTAA AGGTGTTGTT GCAACAACTG ATGTGGTTGA GGCATGCACT
GGTGTCAATA TTGCCGTGAT GGTTGGTGGA TTCCCAAGAA AAGAAGGTAT GGAGAGGAAA GATGTGATGT CTAAGAATGT
CTCAATTTAC AAGTCTCAGG CTTCTGCCCT TGAAAAACAT GCTGCTGCCA ACTGCAAGGT TCTGGTTGTT GCTAACCCAG
CAAACACCAA TGCATTGATC TTGAAGGAAT TTGCCCCATC AATTCCAGAG AAAAACATTT CTTGTTTGAC TAGATTGGAT
CACAACAGGG CCCTGGGGCA AATTTCTGAA AGACTTGGTG TTCAGGTTTC TGAAGTGAAG AATGTCATAA TCTGGGGTAA
TCACTCATCC ACTCAGTATC CCGATGTTAA CCATGCAACT GTTACAACCC CAGCTGGGGA CAAATCAGTC CGTGAACTTG
TTGCTGATGA TGCCTGGTTG AATGGGGAGT TCATTACAAC TGTTCAACAA CGTGGTGCTG CAATTATCAA GGCTAGAAAG
CTTTCAAGTG CACTATCAGC TGCTAGTGCT GCTTGTGACC ATATTAGAGA TTGGGTTCTT GGAACTCCTC AGGGCACCTG
GGTGTCAATG GGAGTATATT CCGATGGATC GTACAATGTT CCAGCTGGAC TGATCTATTC ATTCCCTGTC ACTTGTGCCA
ATGGGGAATG GACAATTGTC CAAGGACTTC CAATTGACGA GATCTCAAGG AAGAAGTTGG ACTTGACAGG AGAAGAGCTT
TCTGAGGAGA AGGCATTGGC TTACTCATGC CTCTCGTAG

[show][hide][copy]PROTEIN

>Vigan.08G360500.01
MAKDPVRVLV TGAAGQIGYA LVPMIARGVM LGPDQPVILH MLDIPPAAES LNGVKMELVD AAFPLLKGVV ATTDVVEACT
GVNIAVMVGG FPRKEGMERK DVMSKNVSIY KSQASALEKH AAANCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD
HNRALGQISE RLGVQVSEVK NVIIWGNHSS TQYPDVNHAT VTTPAGDKSV RELVADDAWL NGEFITTVQQ RGAAIIKARK
LSSALSAASA ACDHIRDWVL GTPQGTWVSM GVYSDGSYNV PAGLIYSFPV TCANGEWTIV QGLPIDEISR KKLDLTGEEL
SEEKALAYSC LS*