VIGGS:GBrowse

Vigan.08G361900.01

Basic Information:

Name:	Vigan.08G361900.01 Multiple alignment Variant Information
Position:	Chr08:46094253..46109958 (+ strand)
Length:	15706

Functional Information:

Description:	Similar to Cyanate hydratase. [I1L7G1, Glycine max]
GO:	Biological Process: cyanate metabolic process (GO:0009439)
	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: cyanate hydratase activity (GO:0008824)
InterPro:	Cyanate lyase, C-terminal (IPR003712)
	Cyanate hydratase (IPR008076)
	Lambda repressor-like, DNA-binding domain (IPR010982)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:70.64,49.20,46.56,55.93,65.78,77.95,39.74,44.28
Arabidopsis thaliana homolog:	AT3G23490.1

Automatic updates:

Name:	NM_001248706 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max Cyanate hydratase (CYN), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:46094253..46094379 (+ strand)
Length:	127
Type:	five_prime_UTR

Position:	Chr08:46094380..46094648 (+ strand)
Length:	269
Type:	CDS

Position:	Chr08:46101449..46101520 (+ strand)
Length:	72
Type:	CDS

Position:	Chr08:46109177..46109285 (+ strand)
Length:	109
Type:	CDS

Position:	Chr08:46109583..46109630 (+ strand)
Length:	48
Type:	CDS

Position:	Chr08:46109631..46109958 (+ strand)
Length:	328
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G361900.01
TTTTGCCTTT GGAAAAGCAA ATAATTTACG CCCACAATAA AACTTAACTA TTTGGCATAT ATAACATGAT TAGACGACCA
TGTAGTTGAA TCCGAAGATC AGTGTGTGTC CCTGTTTGCG GTGTGAGATG GAGCAGAACA AAGAAAGCAC AGTGGCAAGT
CTGCAAGCTG TGAAGCGTGA GAGTGGGAAG TCATACAATC AATTAGCGAA GGAGACAGGG CTCACCAATG TCTATGTTGC
TCAGCTTCTC CGGAGACAGG CTCAGCTCAA ACCCGACACT GCCCCTCGTC TGCGGGAGGC GCTGCCCGAC CTGACCGAAT
ACCTTATGCG GGAGATGATG AGACCCCCTT TGAGATCTTA CGATCCCAGT CTTATCCAAG ACCCCACTGT TTATAGGTTG
AATGAAGCTG TAATGCATTT TGGGGAGAGC ATCAAAGAGA TAATCAATGA GGAGTTTGGT GATGGGATCA TGTCAGCAAT
AGATTTCTAC TGCTCAGTTG ACAAAATTCA AGGAGTGGAT GGGAAGGATC GTGTGGTAGT GACATTTGAT GGGAAATATT
TGCCTCACTC GGAACAGAAA TCTGAGCACA TGGTTTCAAG ACCAAGGCCA CAGGGGAAAC AATGAGTATC ATAAAAGAAG
GACCAACTGC GAAATCTTCA AGACATGTAT AACTGCACAT GTTGTATTTG GTGACTGCTA TTCTGTGTTG CCCACAGAGA
GACAATGGAA GAGAAAATAA AAATTTTATG CTATGGTTTG TGGTAGGAGA TTTCATGGCA CTTGGATCAT AGATTTTAAT
GTCAGAAACT TGGTAAGATG CAGAAGTTTG TATTGTACAT GGTTAAGTCA AACAAACGTA ATAATATTCA TTTTATCCAT
CTCTATTATG TCGCCTATGG TAAAATGTGC AATCCTCAGA CAGTATTAAT GAGTAAAAAT AAATCAATTT TCC

[show][hide][copy]CDS

>Vigan.08G361900.01
ATGGAGCAGA ACAAAGAAAG CACAGTGGCA AGTCTGCAAG CTGTGAAGCG TGAGAGTGGG AAGTCATACA ATCAATTAGC
GAAGGAGACA GGGCTCACCA ATGTCTATGT TGCTCAGCTT CTCCGGAGAC AGGCTCAGCT CAAACCCGAC ACTGCCCCTC
GTCTGCGGGA GGCGCTGCCC GACCTGACCG AATACCTTAT GCGGGAGATG ATGAGACCCC CTTTGAGATC TTACGATCCC
AGTCTTATCC AAGACCCCAC TGTTTATAGG TTGAATGAAG CTGTAATGCA TTTTGGGGAG AGCATCAAAG AGATAATCAA
TGAGGAGTTT GGTGATGGGA TCATGTCAGC AATAGATTTC TACTGCTCAG TTGACAAAAT TCAAGGAGTG GATGGGAAGG
ATCGTGTGGT AGTGACATTT GATGGGAAAT ATTTGCCTCA CTCGGAACAG AAATCTGAGC ACATGGTTTC AAGACCAAGG
CCACAGGGGA AACAATGA

[show][hide][copy]PROTEIN

>Vigan.08G361900.01
MEQNKESTVA SLQAVKRESG KSYNQLAKET GLTNVYVAQL LRRQAQLKPD TAPRLREALP DLTEYLMREM MRPPLRSYDP
SLIQDPTVYR LNEAVMHFGE SIKEIINEEF GDGIMSAIDF YCSVDKIQGV DGKDRVVVTF DGKYLPHSEQ KSEHMVSRPR
PQGKQ*