GBrowse Details

Vigan.08G364400.01

Basic Information:
Name: Vigan.08G364400.01
Multiple alignment
Variant Information
Position: Chr08:46372527..46381282 (- strand)
Length: 8756
Functional Information:
Description: Similar to Uncharacterized protein. [I1JB78, Glycine max]
InterPro: Protein of unknown function DUF2363 (IPR019312)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:133.30,82.82,22.56,21.85,29.22,22.66,26.24,19.65
Arabidopsis thaliana homolog: AT5G18420.2
Automatic updates:
Name: NM_001254657 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100804854 (LOC100804854), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:46372527..46372921 (- strand)
Length: 395
Type: three_prime_UTR
Position: Chr08:46372922..46373019 (- strand)
Length: 98
Type: CDS
Position: Chr08:46374038..46374116 (- strand)
Length: 79
Type: CDS
Position: Chr08:46376185..46376326 (- strand)
Length: 142
Type: CDS
Position: Chr08:46376427..46376500 (- strand)
Length: 74
Type: CDS
Position: Chr08:46376582..46376653 (- strand)
Length: 72
Type: CDS
Position: Chr08:46377578..46377715 (- strand)
Length: 138
Type: CDS
Position: Chr08:46377794..46377944 (- strand)
Length: 151
Type: CDS
Position: Chr08:46378107..46378252 (- strand)
Length: 146
Type: CDS
Position: Chr08:46378413..46378466 (- strand)
Length: 54
Type: CDS
Position: Chr08:46379229..46379315 (- strand)
Length: 87
Type: CDS
Position: Chr08:46380533..46380643 (- strand)
Length: 111
Type: CDS
Position: Chr08:46380954..46381112 (- strand)
Length: 159
Type: CDS
Position: Chr08:46381113..46381282 (- strand)
Length: 170
Type: five_prime_UTR


>Vigan.08G364400.01
ATTTAATTTC CTTTCGTTGT TCTTGTTCAT GGAGGTGAGT ATTAACAGCA GAGCGGCATA GAAGAGAGTG AGACAGACAG
AGAGAGAGGA AGAAAACCTA GAAATCGCGT TTTTGACTTA AGAGCGTGTC CCAAATTGTG AAACCCTAAC ACAGGAACGC
AATCTGGAAG ATGAGCATTC GAAGGTTGAG TAGCGAAGAA TCGCAAGCGC TTTACTCTCT ACTCAGAGCG GAACAGCGTC
CATTCCATGA GATCCTCTCG CAATTCAACT CCTCATTTCC TTCCTCTCGT CATTTCACTC TCTCTTCTTA TCTCCTCATC
CTGTTGCAGG ACATCAAGGT TCTCACCACC GCTGAGAGGT TAATAGCTTT TTCTCTGCTT GTTGAGGCTT ATTCATCCCA
GAAACCTGCT TCAAATCCCT TCATAAGCTT TGTTGTCAAC GCTTCCTGTG ATGAAGGGTC AGAAAAAGTT GAGAGGGCAT
TTATTCTGCA GCTACTCGGT TTTGATAGCT CCAATAGTGG GAAAGAGTTT CTTAAACAGT CTGCATCAGA TTATGTTAAA
GGATTTGATG AGTCATTACA TGAGTTCCCG CCTCTAGATC AGATGAAGCA GCAGTTTTCT GATAAAGTTC ATCTAGAACC
ATATCATTGC TTATTAAAAG ATGGTACTGT AAAAAGTGTA GTCCCAGACC CAGATGTTCC CCCAAGTTGT GATGCAGATT
CATTAGAGTT TGACGTGCGA CCTGGAACAA AAACTAAATA TGGTGCTGGA GATAAAGAAG AGGCAGTAGT TGGGTTGTTG
TCAAATCTTT CATTGGAAGG ATTAAATCCT CATTGGATCA GACCACTTCC ACCAAGGCTG CCTATACTTG ACGGGGAGCT
AGTTTGGCTC AACCCTGATG ACAATCATGA ACTTATGTGG GACTATGGTA TGTGTGTTGA TACCAGCAGG GGGGCTGCGG
TAAGGGACTT AATTGCAAAA GCTCTGAAGG GAGCCCTCGC ACCTGCACAG CAAGAGCAAG TTCTGGTGGA GCTAGCCAAT
GATCCAAAGC TTGTATATCA CTGTGGACTG ACACCAAGAA AATTGCCAGA ACTGGTGGAA AACAATCCCC TTATTGCAGT
TGATGTTCTC ACTAAGTTGA TTAAGTCTCC AGAAATATCA GAATACTTTA CAGTACTTGT CAATATGGAT ATGAGTCTAC
ATTCAATGGA AGTTGTGAAC AGGCTTACGA CAGCAGTTGA ACTACCGTCA CAATTCATTC ATATGTACAT AACGAATTGT
ATAGCATCCT GTGTGAGCAT AAAGGATAAA TACATGCAAA ACAGGCTTGT GAGACTTGTC TGTGTGTTTT TGCAAAGCCT
CATTCGGAAT GACATTATTA ATGTTAAAGA TCTCTTCATT GAAGTTCAAG CGTTTTGCAT CGAGTTTTCA AGGATTAGGG
AGGCAGCTGC GTTGTTTAGA CTTCTCAAGT CTTTGGAATG ATTGTCGTTT TAGCTTGTCA ATTTCCCCCT CTTGCTGGTC
TAATTTCAAG ACATTCTGTA GATATGTATC TACCTAGAGC TAGGTAGCGT TATGTACTCA TTTCAAATTG TGGACAATAA
ATCAAGATTA TAGCTTTAAT GTCATTTGCA TTTAATTGTA AGGGTTTATT TGTGAAATGT TCAAACAAGT TAGAATAGGG
AATTTAGAGT GTAATTGAAT TCTATTCTAT AACTATATAA CTATACTCCT CATCCTCCCT GTGGTTGTCC TTTTGTAACC
CTTTTCTTCT ATGCTAGTCG AGTAAAATAT CAAATCTACA AATACAAGTT TATGCACTTT ATTCTTGTAT TTTCCTAATG
GAAGGGCTAA GAAATTGCAG TAGACCGTGT AGGTTG

>Vigan.08G364400.01
ATGAGCATTC GAAGGTTGAG TAGCGAAGAA TCGCAAGCGC TTTACTCTCT ACTCAGAGCG GAACAGCGTC CATTCCATGA
GATCCTCTCG CAATTCAACT CCTCATTTCC TTCCTCTCGT CATTTCACTC TCTCTTCTTA TCTCCTCATC CTGTTGCAGG
ACATCAAGGT TCTCACCACC GCTGAGAGGT TAATAGCTTT TTCTCTGCTT GTTGAGGCTT ATTCATCCCA GAAACCTGCT
TCAAATCCCT TCATAAGCTT TGTTGTCAAC GCTTCCTGTG ATGAAGGGTC AGAAAAAGTT GAGAGGGCAT TTATTCTGCA
GCTACTCGGT TTTGATAGCT CCAATAGTGG GAAAGAGTTT CTTAAACAGT CTGCATCAGA TTATGTTAAA GGATTTGATG
AGTCATTACA TGAGTTCCCG CCTCTAGATC AGATGAAGCA GCAGTTTTCT GATAAAGTTC ATCTAGAACC ATATCATTGC
TTATTAAAAG ATGGTACTGT AAAAAGTGTA GTCCCAGACC CAGATGTTCC CCCAAGTTGT GATGCAGATT CATTAGAGTT
TGACGTGCGA CCTGGAACAA AAACTAAATA TGGTGCTGGA GATAAAGAAG AGGCAGTAGT TGGGTTGTTG TCAAATCTTT
CATTGGAAGG ATTAAATCCT CATTGGATCA GACCACTTCC ACCAAGGCTG CCTATACTTG ACGGGGAGCT AGTTTGGCTC
AACCCTGATG ACAATCATGA ACTTATGTGG GACTATGGTA TGTGTGTTGA TACCAGCAGG GGGGCTGCGG TAAGGGACTT
AATTGCAAAA GCTCTGAAGG GAGCCCTCGC ACCTGCACAG CAAGAGCAAG TTCTGGTGGA GCTAGCCAAT GATCCAAAGC
TTGTATATCA CTGTGGACTG ACACCAAGAA AATTGCCAGA ACTGGTGGAA AACAATCCCC TTATTGCAGT TGATGTTCTC
ACTAAGTTGA TTAAGTCTCC AGAAATATCA GAATACTTTA CAGTACTTGT CAATATGGAT ATGAGTCTAC ATTCAATGGA
AGTTGTGAAC AGGCTTACGA CAGCAGTTGA ACTACCGTCA CAATTCATTC ATATGTACAT AACGAATTGT ATAGCATCCT
GTGTGAGCAT AAAGGATAAA TACATGCAAA ACAGGCTTGT GAGACTTGTC TGTGTGTTTT TGCAAAGCCT CATTCGGAAT
GACATTATTA ATGTTAAAGA TCTCTTCATT GAAGTTCAAG CGTTTTGCAT CGAGTTTTCA AGGATTAGGG AGGCAGCTGC
GTTGTTTAGA CTTCTCAAGT CTTTGGAATG A

>Vigan.08G364400.01
MSIRRLSSEE SQALYSLLRA EQRPFHEILS QFNSSFPSSR HFTLSSYLLI LLQDIKVLTT AERLIAFSLL VEAYSSQKPA
SNPFISFVVN ASCDEGSEKV ERAFILQLLG FDSSNSGKEF LKQSASDYVK GFDESLHEFP PLDQMKQQFS DKVHLEPYHC
LLKDGTVKSV VPDPDVPPSC DADSLEFDVR PGTKTKYGAG DKEEAVVGLL SNLSLEGLNP HWIRPLPPRL PILDGELVWL
NPDDNHELMW DYGMCVDTSR GAAVRDLIAK ALKGALAPAQ QEQVLVELAN DPKLVYHCGL TPRKLPELVE NNPLIAVDVL
TKLIKSPEIS EYFTVLVNMD MSLHSMEVVN RLTTAVELPS QFIHMYITNC IASCVSIKDK YMQNRLVRLV CVFLQSLIRN
DIINVKDLFI EVQAFCIEFS RIREAAALFR LLKSLE*