GBrowse Details

Vigan.08G365600.01

Basic Information:
Name: Vigan.08G365600.01
Multiple alignment
Variant Information
Position: Chr08:46496254..46499455 (- strand)
Length: 3202
Functional Information:
Description: Similar to Uncharacterized protein. [R0HEL3, Capsella rubella.]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L28 (IPR001383)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.39,2.87,22.12,83.65,7.60,14.54,7.03,12.25
Arabidopsis thaliana homolog: AT2G33450.1
Automatic updates:
Name: NM_001254535 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L28, chloroplastic-like (LOC100804320), mRNA; nuclear gene for chloroplast product.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:46496254..46496790 (- strand)
Length: 537
Type: three_prime_UTR
Position: Chr08:46496791..46497023 (- strand)
Length: 233
Type: CDS
Position: Chr08:46498994..46499110 (- strand)
Length: 117
Type: CDS
Position: Chr08:46499206..46499392 (- strand)
Length: 187
Type: CDS
Position: Chr08:46499393..46499455 (- strand)
Length: 63
Type: five_prime_UTR


>Vigan.08G365600.01
TTCAAAAGAA AAAAAAACTG AAAAATCATA AATAAATAAA AAATATTTTT AGATATAAAT AATATGGATA AAATTAATTA
TAATATTTTT TTTTCATCTT ATCCGGGTGC AGCGCATGGT GTGTGGGTAC CAAGTAGTAG GAAATTTGAA GAGATAACAA
ACGCAGAAGA AATGACAATG GCAATGGCAA TGGCGAGTTC TGCAAGCTGT ACGGTGTCGT TTAGGAACAG CTTCGGTCTC
AACAAACCCT CGGATCTTGG CTTCGTCAGC TCGCAGTTGA GCGGCCTCAG AATCTGCTGC CCCAAATTCC CCATACCGCC
CGTCACCGCT TCTCCCTCGT TCCCCGCACC TCTCCCCATC GTAGCCAAGA GAGTTTGTCC CTTCACTGGA AAGAAATCAA
ACAGGGCCAA CAAAGTATCA TTTTCAAACC ATAAGACAAA GAAACTGCAG TTTGTGAACC TTCAGTACAA AAGAATTTGG
TGGGAAGCGG GGAAGCGCTT TGTGAAGCTG CGTTTATCAA CTAAGGCATT GAAAACCATA GAGAAGAATG GACTTGATGC
AGTTGCAAAG AAGGCTGGAA TTGATCTCAG GAAGAAATAA GAGTACCTAA TTATGATTTT GTAACAGAGT ACCTAATTAT
TTCTTCTCCG TATATGACTT TTCAGAAGCA AGTTGTATTG TTTGTAGAGA AAAACAAGAT ATGGAGAGCT TATAGGCAAT
GAATTTCACT GATGGAAATC TCTTTGATAA ACCCCTCGTG CAGCTTATCC ATAGATATCA CAGGATCATT AGTAGTTTCT
TAAATGTGAA TTATCCTACT AAATTGTTTT TCTTTTATGT ATTTTGAATT GCAGTCACCA CAACAAAAAA AGCTGTTGGC
AGAGTCTCTG ACTTTGGCTC TTAGTATGGT AATCCCCTTG CAATGAAGAG AATAAGGTGA ATGACTATGA TAGGTAATTA
CATTTATCAT CTTATCTGTC AAGTATATGG AGATGTTATA TAAATCAGTA TCCTATTTAG AAAGTAGAAA ATGCTGGGTT
TGTAAATCAC AATTAGTTTT GTAATTCTTT AAGCTGCGAA AAGAACAAAA GTGTTTGTTT CATCGCAGAA ATAGGATTTA
AGAAATATTA TACCTGG

>Vigan.08G365600.01
ATGGATAAAA TTAATTATAA TATTTTTTTT TCATCTTATC CGGGTGCAGC GCATGGTGTG TGGGTACCAA GTAGTAGGAA
ATTTGAAGAG ATAACAAACG CAGAAGAAAT GACAATGGCA ATGGCAATGG CGAGTTCTGC AAGCTGTACG GTGTCGTTTA
GGAACAGCTT CGGTCTCAAC AAACCCTCGG ATCTTGGCTT CGTCAGCTCG CAGTTGAGCG GCCTCAGAAT CTGCTGCCCC
AAATTCCCCA TACCGCCCGT CACCGCTTCT CCCTCGTTCC CCGCACCTCT CCCCATCGTA GCCAAGAGAG TTTGTCCCTT
CACTGGAAAG AAATCAAACA GGGCCAACAA AGTATCATTT TCAAACCATA AGACAAAGAA ACTGCAGTTT GTGAACCTTC
AGTACAAAAG AATTTGGTGG GAAGCGGGGA AGCGCTTTGT GAAGCTGCGT TTATCAACTA AGGCATTGAA AACCATAGAG
AAGAATGGAC TTGATGCAGT TGCAAAGAAG GCTGGAATTG ATCTCAGGAA GAAATAA

>Vigan.08G365600.01
MDKINYNIFF SSYPGAAHGV WVPSSRKFEE ITNAEEMTMA MAMASSASCT VSFRNSFGLN KPSDLGFVSS QLSGLRICCP
KFPIPPVTAS PSFPAPLPIV AKRVCPFTGK KSNRANKVSF SNHKTKKLQF VNLQYKRIWW EAGKRFVKLR LSTKALKTIE
KNGLDAVAKK AGIDLRKK*