VIGGS:GBrowse

Vigan.09G010500.01

Basic Information:

Name:	Vigan.09G010500.01 Multiple alignment Variant Information
Position:	Chr09:1008603..1010665 (- strand)
Length:	2063

Functional Information:

Description:	Similar to Chloroplast oxygen-evolving enhancer protein. [V5N8G5, Phaseolus vulgaris]
GO:	Biological Process: photosynthesis (GO:0015979)
	Cellular Component: photosystem II (GO:0009523)
	Cellular Component: photosystem II oxygen evolving complex (GO:0009654)
	Cellular Component: extrinsic to membrane (GO:0019898)
	Molecular Function: calcium ion binding (GO:0005509)
InterPro:	Photosystem II PsbQ, oxygen evolving complex (IPR008797)
InterPro:	PsbQ-like domain (IPR023222)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:4.56,0.77,289.08,2797.55,0.99,559.13,11.81,365.29
Arabidopsis thaliana homolog:	AT4G05180.1

Automatic updates:

Name:	NM_001249612 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306034 (LOC100306034), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:1008603..1008717 (- strand)
Length:	115
Type:	three_prime_UTR

Position:	Chr09:1008718..1008816 (- strand)
Length:	99
Type:	CDS

Position:	Chr09:1009619..1009914 (- strand)
Length:	296
Type:	CDS

Position:	Chr09:1010225..1010498 (- strand)
Length:	274
Type:	CDS

Position:	Chr09:1010499..1010665 (- strand)
Length:	167
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G010500.01
CCAAGTTATC CAAGTGGAAA ATGTTGAGAT AAGGCACTCT CCACAGCCAC TCATAATCAC AGACACAGCA ATCACCATAC
AGAAACCAAA ACTATATTGT CACATTCCAG AAAAGCAAGC ACAAAGGCAA AGAAAGAACT TGGCTAGCTA AGGATCAAGC
AAATACAATG GCTCAAGCAA TGGCATCAAT GGCAGGTAGC CTTCAACTCA GTGGCTCCAC ACGTTTGCAT GCCAAAAGGG
TGTCTTCAGT CACACGTGCG GGATTCACAG TTAGAGCACA ACATCAGCAA GAACAAGTGA GTGGTGATGC TCAGAGCAGC
CGTAGGACAG TGCTTTCTCT TGTTGCTGCT GGTTTGGCCA CTGGCTCCTT TGTTCAAGCT GTTCTTGCTG ATGCCAAATC
CATCAAAGTT GGACCACCTC CTCCACCTTC TGGTGGATTG CCTGGAACCT TGAACTCAGA TGAAGCAAGA GACCTTGATC
TGCCACTGAA AGATAGGTTC TTCCTTCAAC CACTGTCTCC TAGCGAGGCT GCACAAAGGG CAAAGGAATC AGCCAAAGAA
ATTGTTGCTG TTAAGTCTTT AATAGAAAAG AAGGCTTGGC CATATGTTCA GAATGATCTG CGTCTCAGGG CTGAGTATCT
GCGGTTTGAT CTCAACACTG TCATTGCTGC AAAGTCTAAG GATGAGAAGA AATCACTCAA GGAACTCACG GGCAAGCTCT
ACGAGAATAT CAGCAATCTG GATCATGCAG CAAAAATTAA GAGCAGCCCA GAAGCAGAGA AGTACTATGC TGCTACTGTT
TCTACTCTGA ATGATGTTCT TGCGAAGCTT GGTTAATGTG ATTAGTTTCT TGCTTTTTCT TGTGTAAGCT TTTGTCCATG
ATTTTCTCAG ACACTTTGTT GACTGCTATT TTAAGAAAAT CAAATGATGA GAGAAAATTT TCTATAAATA A

[show][hide][copy]CDS

>Vigan.09G010500.01
ATGGCTCAAG CAATGGCATC AATGGCAGGT AGCCTTCAAC TCAGTGGCTC CACACGTTTG CATGCCAAAA GGGTGTCTTC
AGTCACACGT GCGGGATTCA CAGTTAGAGC ACAACATCAG CAAGAACAAG TGAGTGGTGA TGCTCAGAGC AGCCGTAGGA
CAGTGCTTTC TCTTGTTGCT GCTGGTTTGG CCACTGGCTC CTTTGTTCAA GCTGTTCTTG CTGATGCCAA ATCCATCAAA
GTTGGACCAC CTCCTCCACC TTCTGGTGGA TTGCCTGGAA CCTTGAACTC AGATGAAGCA AGAGACCTTG ATCTGCCACT
GAAAGATAGG TTCTTCCTTC AACCACTGTC TCCTAGCGAG GCTGCACAAA GGGCAAAGGA ATCAGCCAAA GAAATTGTTG
CTGTTAAGTC TTTAATAGAA AAGAAGGCTT GGCCATATGT TCAGAATGAT CTGCGTCTCA GGGCTGAGTA TCTGCGGTTT
GATCTCAACA CTGTCATTGC TGCAAAGTCT AAGGATGAGA AGAAATCACT CAAGGAACTC ACGGGCAAGC TCTACGAGAA
TATCAGCAAT CTGGATCATG CAGCAAAAAT TAAGAGCAGC CCAGAAGCAG AGAAGTACTA TGCTGCTACT GTTTCTACTC
TGAATGATGT TCTTGCGAAG CTTGGTTAA

[show][hide][copy]PROTEIN

>Vigan.09G010500.01
MAQAMASMAG SLQLSGSTRL HAKRVSSVTR AGFTVRAQHQ QEQVSGDAQS SRRTVLSLVA AGLATGSFVQ AVLADAKSIK
VGPPPPPSGG LPGTLNSDEA RDLDLPLKDR FFLQPLSPSE AAQRAKESAK EIVAVKSLIE KKAWPYVQND LRLRAEYLRF
DLNTVIAAKS KDEKKSLKEL TGKLYENISN LDHAAKIKSS PEAEKYYAAT VSTLNDVLAK LG*