GBrowse Details

Vigan.09G012900.01

Basic Information:
Name: Vigan.09G012900.01
Multiple alignment
Variant Information
Position: Chr09:1288501..1295958 (- strand)
Length: 7458
Functional Information:
Description: Similar to E3 ubiquitin-protein ligase RNF25-like isoform X1. [XP_004515347.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
RWD domain (IPR006575)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:42.68,32.23,11.93,18.23,16.41,8.22,10.31,16.49
Arabidopsis thaliana homolog: AT3G60300.2
Automatic updates:
Name: NM_001254616 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max E3 ubiquitin-protein ligase RNF25-like (LOC100791789), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:1288501..1288929 (- strand)
Length: 429
Type: three_prime_UTR
Position: Chr09:1288930..1289346 (- strand)
Length: 417
Type: CDS
Position: Chr09:1290495..1290610 (- strand)
Length: 116
Type: CDS
Position: Chr09:1291588..1291679 (- strand)
Length: 92
Type: CDS
Position: Chr09:1291827..1291966 (- strand)
Length: 140
Type: CDS
Position: Chr09:1294072..1294209 (- strand)
Length: 138
Type: CDS
Position: Chr09:1294411..1294449 (- strand)
Length: 39
Type: CDS
Position: Chr09:1295645..1295791 (- strand)
Length: 147
Type: CDS
Position: Chr09:1295792..1295958 (- strand)
Length: 167
Type: five_prime_UTR


>Vigan.09G012900.01
TTTTTTTAGA AAATGAAAAA GAAAAAAATC AAAGAAAACC ACGAAGACCA AACCCTTCTC CATAAAGGTG ATGATCAAAT
CAATGTTTTG ATCTGTGGCT ATCACATCAA AATCAAATTA GAACTTCATC TCACAATCTA ATTGGAACCC AAAAGGAAAA
TCAGAGAATG GGGAACGAAG AAGAAGAGGA ATTGGTGGCT GAAGTTGAAG CAGTGGAAGC CGTGTATGGA ACCGATTGCA
CCGTTCTCAG TTCATTTCCT CCCCATTTTC ACCTCTTTCT CAAACCCAGA ACTGCTGATG TTTCCTCCCA ACAGTTTGTG
GAAGCTGTTC TGGAGATAAA AGCTACCTCA CAGTATCCAA AAGAACCACC TTCTATTGAG CTTGTGGATT GCAAGGGTCT
GGATGAACAG AGACAGAAAC ATCTATTAAA TTACATACAA AGTAAAGCCT GTGAGATCTC CCCTTGTTTA ATGCTTGTAG
CTCTTTGTGA GGAAGCTGTT GAGAAACTGT CAGCTATGAA TCATCCTGAT GGTGATTGTC CATTGTGTTT ATTCCCTTTG
GTCCCAGAAG ATCAGCAAAG CGAAACTTTG CCTTTTATGA AGTTAATGTC TTGTTTTCAT TGCTTCCACA GTGAATGTAT
CATTAGATGG TGGAAATGGC TTCAAAGTTT TAAAGAACCC GACTCTGCCA ATACAGACAG TGCAGCTGCA CATCGGAACC
ATGACAATCA TAAGAAAATG GAAGAGAGTG TCGGAAACTG CCCTGTCTGT CGCAAACCTT TTCTTGCCAA GGATTTGGAC
CATGTGCTTG CCCTAGTTGG ATCATACTCT TCCCAATCGA CTTCAGACAA TGAAGAACTC AACGGTGAAG ATACGCTCCT
TCAATCAGAG AATGAGATCA TTAGGAGACA AAAATTTGAA GCCATCCTAA ATTTACAGAA GGAGAACACT GGCTTGATTG
AACCCAAAAA AGATATATTC ATATTACCTG GTATGTATCT TCCACAACCA GTTGCAATGC CGAGCTCGAC ATCAACCAAG
GAATCTGGTG AGCAGACAGA AAATGAACCA CCTGCAGTTG TGTCAGCAAA ACATGTCGGT GGGACATCCA ATGGACCTAG
TTCTAGCAGG CAGAGGAATT TCGGTCAAAG GAGGCAGAGA GCAAGAAGTG ATAACCACTC TAGTTCAACT GTAAGAAATC
CAAGAAAACC AGTTCAACAG TGGGTAAGAA GAGATACTCC CAGCAATAAG CAATAGAAGT GATGTCTCTC ACTGGTATAG
CAGTGTGTTT GGTTTAGAGA TGTGGATGTG GAAATTGGAA GTAGATTTTG CTTTATTTGA AGAGAAAACA AACATACTTT
AGGTTTTATA TCAAATATAT GTTCAAAAAT GGTGAAAAAC AAAGTATAGA TAGTAGAAAA AGACAGACAT ATGTGCCTCT
TTTTTCCCTT TTTCAGCTAA AGGGGTGCTG GAGAAACAGA AGCGAGGAAA GGAAAGACAA GCAAATTGCT GTGTTTTCTG
TTTTTGCTTT TATGATTGAT TTTGCAATCA AGTTATGATT TGACATTCTG CCTTTTCTCA TAATATTTTC TTAATCGGAG
ATTTTTTGTT TTGATATGGA GTTTTGAATT CTACTTTTAA TTCTATTAAA GGAATGGCCG TTGAGCCTAA CTGAATTTTA
TGCCT

>Vigan.09G012900.01
ATGGGGAACG AAGAAGAAGA GGAATTGGTG GCTGAAGTTG AAGCAGTGGA AGCCGTGTAT GGAACCGATT GCACCGTTCT
CAGTTCATTT CCTCCCCATT TTCACCTCTT TCTCAAACCC AGAACTGCTG ATGTTTCCTC CCAACAGTTT GTGGAAGCTG
TTCTGGAGAT AAAAGCTACC TCACAGTATC CAAAAGAACC ACCTTCTATT GAGCTTGTGG ATTGCAAGGG TCTGGATGAA
CAGAGACAGA AACATCTATT AAATTACATA CAAAGTAAAG CCTGTGAGAT CTCCCCTTGT TTAATGCTTG TAGCTCTTTG
TGAGGAAGCT GTTGAGAAAC TGTCAGCTAT GAATCATCCT GATGGTGATT GTCCATTGTG TTTATTCCCT TTGGTCCCAG
AAGATCAGCA AAGCGAAACT TTGCCTTTTA TGAAGTTAAT GTCTTGTTTT CATTGCTTCC ACAGTGAATG TATCATTAGA
TGGTGGAAAT GGCTTCAAAG TTTTAAAGAA CCCGACTCTG CCAATACAGA CAGTGCAGCT GCACATCGGA ACCATGACAA
TCATAAGAAA ATGGAAGAGA GTGTCGGAAA CTGCCCTGTC TGTCGCAAAC CTTTTCTTGC CAAGGATTTG GACCATGTGC
TTGCCCTAGT TGGATCATAC TCTTCCCAAT CGACTTCAGA CAATGAAGAA CTCAACGGTG AAGATACGCT CCTTCAATCA
GAGAATGAGA TCATTAGGAG ACAAAAATTT GAAGCCATCC TAAATTTACA GAAGGAGAAC ACTGGCTTGA TTGAACCCAA
AAAAGATATA TTCATATTAC CTGGTATGTA TCTTCCACAA CCAGTTGCAA TGCCGAGCTC GACATCAACC AAGGAATCTG
GTGAGCAGAC AGAAAATGAA CCACCTGCAG TTGTGTCAGC AAAACATGTC GGTGGGACAT CCAATGGACC TAGTTCTAGC
AGGCAGAGGA ATTTCGGTCA AAGGAGGCAG AGAGCAAGAA GTGATAACCA CTCTAGTTCA ACTGTAAGAA ATCCAAGAAA
ACCAGTTCAA CAGTGGGTAA GAAGAGATAC TCCCAGCAAT AAGCAATAG

>Vigan.09G012900.01
MGNEEEEELV AEVEAVEAVY GTDCTVLSSF PPHFHLFLKP RTADVSSQQF VEAVLEIKAT SQYPKEPPSI ELVDCKGLDE
QRQKHLLNYI QSKACEISPC LMLVALCEEA VEKLSAMNHP DGDCPLCLFP LVPEDQQSET LPFMKLMSCF HCFHSECIIR
WWKWLQSFKE PDSANTDSAA AHRNHDNHKK MEESVGNCPV CRKPFLAKDL DHVLALVGSY SSQSTSDNEE LNGEDTLLQS
ENEIIRRQKF EAILNLQKEN TGLIEPKKDI FILPGMYLPQ PVAMPSSTST KESGEQTENE PPAVVSAKHV GGTSNGPSSS
RQRNFGQRRQ RARSDNHSSS TVRNPRKPVQ QWVRRDTPSN KQ*