VIGGS:GBrowse

Vigan.09G015200.01

Basic Information:

Name:	Vigan.09G015200.01 Multiple alignment Variant Information
Position:	Chr09:1672831..1676224 (+ strand)
Length:	3394

Functional Information:

Description:	Similar to protein mago nashi homolog. [XP_004501210.1, Cicer arietinum]
GO:	Cellular Component: nucleus (GO:0005634)
InterPro:	Mago nashi protein (IPR004023)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:181.14,127.47,70.74,48.21,72.18,123.69,108.90,56.94
Arabidopsis thaliana homolog:	AT1G02140.1

Automatic updates:

Name:	NM_001249161 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein mago nashi-like (LOC100305742), mRNA.
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001363188 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein mago nashi homolog (LOC100499908), transcript variant 2, mRNA.
PubMed ID:	21667246 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:1672831..1672992 (+ strand)
Length:	162
Type:	five_prime_UTR

Position:	Chr09:1672993..1673211 (+ strand)
Length:	219
Type:	CDS

Position:	Chr09:1673305..1673481 (+ strand)
Length:	177
Type:	CDS

Position:	Chr09:1675837..1675896 (+ strand)
Length:	60
Type:	CDS

Position:	Chr09:1675897..1676224 (+ strand)
Length:	328
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G015200.01
GACAAATTGA AATTCATTTG AAATGGTTCA GAAAGGGGGA CCCTAAAAAA CCCTTCTGCC CTTCTTCTCC TTCTACAGAG
ACCCTCAGTA GCTTCTGACG CTCACAATTT CTCTGTTCTC CACGAAACTC ATAGAGCTTC GTTTCGATTC GCGGTGGTTT
CAATGGGGAG CGAAGAGGAG AACAACGAAT TCTATCTCCG CTACTACGTC GGTCACAAAG GGAAGTTCGG TCACGAGTTC
TTGGAGTTCG AGTTTCGCCC CGACGGGAAG CTTCGCTACG CTAATAACTC CAACTACAAA AACGACACCA TCATCCGCAA
GGAGGTTTAC CTCACTCCCG CCGTTCTCCG CGAGTGCCGT CGCATCATCT CCGAAAGCGA GATTATGAAG GAAGATGATA
ACAACTGGCC AGAACCGGAC CGGGTGGGGC GACAGGAGCT GGAAATTGTT ATGGGGAATG AGCACATATC GTTCACGACC
TCGAAAATTG GATCTTTGGT GGATGTTCAG AGCAGTGCTG ACCCGGAAGG ACTTCGTATC TTTTACTACC TTGTTCAGGA
TTTGAAGTGC TTTGTCTTTT CTCTCATTTC ACTTCACTTC AAGATCAAAC CTATCTAAGG TGCTTTCAGT ATCATGCTTT
CTTCCTCTTG GAGCCTTGCT AATGGAGTTC AAGATCTGAT AGAGTGACTT TGTAATCGTG AGTATGATTT GGTTCTATAT
TCTCATGAAA TGGAATTTTG GGGGTGAAAT CCCTGTACTA AAAGTGTTGA TTGGATTTGA TCGGATTTTA TGCATGACTG
AGTTATCATT CTTTCATTGC CTTGCTTTCA CAGTTGAATC ATCCCGAATG TTATATTCTG GAATTATTGT CAGCGTGAGA
TGCGTACATG CTACTTTTAT GACGATTTCT GAGATGGAAA AATATTTTAC TTAGTTTATT TCAAAA

[show][hide][copy]CDS

>Vigan.09G015200.01
ATGGGGAGCG AAGAGGAGAA CAACGAATTC TATCTCCGCT ACTACGTCGG TCACAAAGGG AAGTTCGGTC ACGAGTTCTT
GGAGTTCGAG TTTCGCCCCG ACGGGAAGCT TCGCTACGCT AATAACTCCA ACTACAAAAA CGACACCATC ATCCGCAAGG
AGGTTTACCT CACTCCCGCC GTTCTCCGCG AGTGCCGTCG CATCATCTCC GAAAGCGAGA TTATGAAGGA AGATGATAAC
AACTGGCCAG AACCGGACCG GGTGGGGCGA CAGGAGCTGG AAATTGTTAT GGGGAATGAG CACATATCGT TCACGACCTC
GAAAATTGGA TCTTTGGTGG ATGTTCAGAG CAGTGCTGAC CCGGAAGGAC TTCGTATCTT TTACTACCTT GTTCAGGATT
TGAAGTGCTT TGTCTTTTCT CTCATTTCAC TTCACTTCAA GATCAAACCT ATCTAA

[show][hide][copy]PROTEIN

>Vigan.09G015200.01
MGSEEENNEF YLRYYVGHKG KFGHEFLEFE FRPDGKLRYA NNSNYKNDTI IRKEVYLTPA VLRECRRIIS ESEIMKEDDN
NWPEPDRVGR QELEIVMGNE HISFTTSKIG SLVDVQSSAD PEGLRIFYYL VQDLKCFVFS LISLHFKIKP I*