VIGGS:GBrowse

Vigan.09G016500.01

Basic Information:

Name:	Vigan.09G016500.01 Multiple alignment Variant Information
Position:	Chr09:1820350..1822749 (+ strand)
Length:	2400

Functional Information:

Description:	Similar to Nucleoside diphosphate kinase. [T2DPE5, Phaseolus vulgaris]
GO:	Biological Process: nucleoside diphosphate phosphorylation (GO:0006165)
	Biological Process: GTP biosynthetic process (GO:0006183)
	Biological Process: UTP biosynthetic process (GO:0006228)
	Biological Process: CTP biosynthetic process (GO:0006241)
	Molecular Function: nucleoside diphosphate kinase activity (GO:0004550)
	Molecular Function: ATP binding (GO:0005524)
InterPro:	Nucleoside diphosphate kinase (IPR001564)
InterPro:	Nucleoside diphosphate kinase, active site (IPR023005)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:295.07,385.26,320.71,150.24,482.61,1294.15,457.06,216.32
Arabidopsis thaliana homolog:	AT4G09320.1

Automatic updates:

Name:	NM_001248469 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max nucleoside diphosphate kinase (LOC547870), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249763 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max nucleoside diphosphate kinase (LOC547709), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:1820350..1820594 (+ strand)
Length:	245
Type:	five_prime_UTR

Position:	Chr09:1820595..1820648 (+ strand)
Length:	54
Type:	CDS

Position:	Chr09:1821195..1821243 (+ strand)
Length:	49
Type:	CDS

Position:	Chr09:1821482..1821713 (+ strand)
Length:	232
Type:	CDS

Position:	Chr09:1822307..1822421 (+ strand)
Length:	115
Type:	CDS

Position:	Chr09:1822422..1822749 (+ strand)
Length:	328
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G016500.01
TCCTTTCTAA AAGAGAGAAT TAGAATATTT TTAGGTAAGA GAAGAAAAGG AAAAACAGTG AAATGAAAAT GATTCCAAAG
GCCAAATGCA GAATATTCGT TCGTGAAAAT TAGGGTTAGG GTTGGAGTCC TCATCAGCAC CGTATATAAA TACCCTTTTC
TCTCCGACAT CCTATCGTAT ATCTCACGCT CTCTCTTGCT CACTCACTAC AGAAAACACC ATAATCAATC GTCTAAAAGA
GAGAGATGGC CGAGCAAACC TTCATCATGA TCAAGCCTGA TGGCGTTCAG AGAGGCCTTG TTGGTGAGAT CATTGCCAGA
TTTGAGAAGA AAGGTTTCTA CTTGAAAGGT TTGAAACTTA TTAGTGTGGA GCGTGCTTTT GCTGAAAAGC ACTATGCTGA
TTTATCTGCC AAGCCTTTCT TCAGTGGATT GGTGGATTAC ATTATCTCTG GCCCTGTTGT TGCCATGATT TGGGAGGGTA
AAAATGTTGT GGTTACTGGC CGAAAGATTA TTGGGGCCAC TAACCCAGCT CAATCTGAGC CTGGAACTAT CCGTGGTGAC
TATGCTATTG ACATTGGAAG GAATGTTATC CATGGAAGTG ATTCAGTTGA GAGTGCTCGC AAGGAAATTG CATTGTGGTT
CCCTGATGGC TCTGTTAACT GGCAAAGCTC CCAACACTCT TGGATCTATG AGTAAACCAT ATGCTTCAAG TTGATCTTGA
AGTTGCTTGC CCCAGGATGA TCCAGATTAT CTAATCTACA TGTTCTGTTT CGGTCCATTT CTGGGCTTTT GTTAGAGTTT
GGTACCTTGG TTTTGTATCT CAAGTCTCTG CTTATGCTAT GTCTGTTGAA ACATGCTCAC AGTCTGATAA ATCAAAATTT
CAAACTAGTT TTGCTTTTGC TTATCGTTTG TATGTTTTTG CTTGAGATGA TGCAATGCTG TTTAGTTTGA ATCTTCTATG
CACGCGTTAT CTCATTCAAA TTTAGTTTAA ATAATTTGCT TGGAATGGTA ATTTAAAGCT TGG

[show][hide][copy]CDS

>Vigan.09G016500.01
ATGGCCGAGC AAACCTTCAT CATGATCAAG CCTGATGGCG TTCAGAGAGG CCTTGTTGGT GAGATCATTG CCAGATTTGA
GAAGAAAGGT TTCTACTTGA AAGGTTTGAA ACTTATTAGT GTGGAGCGTG CTTTTGCTGA AAAGCACTAT GCTGATTTAT
CTGCCAAGCC TTTCTTCAGT GGATTGGTGG ATTACATTAT CTCTGGCCCT GTTGTTGCCA TGATTTGGGA GGGTAAAAAT
GTTGTGGTTA CTGGCCGAAA GATTATTGGG GCCACTAACC CAGCTCAATC TGAGCCTGGA ACTATCCGTG GTGACTATGC
TATTGACATT GGAAGGAATG TTATCCATGG AAGTGATTCA GTTGAGAGTG CTCGCAAGGA AATTGCATTG TGGTTCCCTG
ATGGCTCTGT TAACTGGCAA AGCTCCCAAC ACTCTTGGAT CTATGAGTAA

[show][hide][copy]PROTEIN

>Vigan.09G016500.01
MAEQTFIMIK PDGVQRGLVG EIIARFEKKG FYLKGLKLIS VERAFAEKHY ADLSAKPFFS GLVDYIISGP VVAMIWEGKN
VVVTGRKIIG ATNPAQSEPG TIRGDYAIDI GRNVIHGSDS VESARKEIAL WFPDGSVNWQ SSQHSWIYE*