VIGGS:GBrowse

Vigan.09G018700.01

Basic Information:

Name:	Vigan.09G018700.01 Multiple alignment Variant Information
Position:	Chr09:2036374..2037667 (- strand)
Length:	1294

Functional Information:

Description:	Similar to uncharacterized LOC101206273. [XP_004159994.1, Cucumis sativus]
GO:	Molecular Function: zinc ion binding (GO:0008270)
InterPro:	Zinc finger, LIM-type (IPR001781)
InterPro:	Protein of unknown function DUF581 (IPR007650)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:14.79,25.58,50.92,65.51,72.16,49.09,38.98,75.51

Automatic updates:

Name:	NM_001248221 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499981 (LOC100499981), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:2036374..2037031 (- strand)
Length:	658
Type:	three_prime_UTR

Position:	Chr09:2037032..2037077 (- strand)
Length:	46
Type:	CDS

Position:	Chr09:2037425..2037600 (- strand)
Length:	176
Type:	CDS

Position:	Chr09:2037601..2037667 (- strand)
Length:	67
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G018700.01
TTTTTCTTTG GTTCCATTCC TGCATTTTCT AGCTTCTTCT TCTCTTCTCT CTCTGAGTTT TTCATCTATG GCTACTTTTC
CTTCTCCCCC TTCACCTTCT TCTTCTTCCT CAATTCCTTC TCCAAGATCT AGCATGTTTT ACTATGCTAG AAGTGAAAAC
CACTATGAGG AACCTCACTT CCTTCAAGCT TGTTTTCTTT GCAGAAAACC ACTAGGCCAA AACCGTGACA TCTTCATGTA
CAGAGGGAAC ACACCATTTT GCAGCAAAGA TGCAGGCAGG AGCAAATAGA GATTGATGAC GCAAAGGAGA AAACTTGGAA
GCTTTCTTCC AAAAGGGGTG TGAGACAATC AGAGAACAGT CAAAATAATT CCACAACAAA TAAGGCTGTG AGAACAGGCA
CAGTGGCAGT GGCATAATCA AGGAACAATC CAGGACATGA TGATGATGAT GATCATGATT GTGATTGATG AAGATGAGTG
GGGAAAAGGG TCTAATTTTT TTGAAGTGAA AAAGATGGAA TGGAGAATTC CAAAGGAAGA TGATGAAGTG CAATCAATAA
TCCATGAAGA TTCTGATGAA ACCGGGATGA ATCTTCTCTG TCTTTGTAAA GAAAAAAGTT AGGGTTTTTT TTTTTTTTTT
TCATTTGGGA GAAAAGAAAT ACCCAAACAA GAATTTTTGG CTACTTTTGT TTCTTTTTGG TAATATTTGA TTTGACCCTT
TTATTTTTAC TCTTTTTCTC TCGTGTTCTA TAAGAAAAAG AAAAAACATC ATGGATGAAT TGATGAGATG GTGTTTCGCT
TTCCCAAAAT TTGAGAAAAT GAAGAAAAAG CGTAGAAGAT TCTTCATCCA AGATCTAGAT CAGTGAACCT TGTTACATTC
TTCCAAGAGC TTGTGTTCAT GGCAAATTTT ATTTTCCTTG GTTACTAAAA AATTATTTTC ATATAAA

[show][hide][copy]CDS

>Vigan.09G018700.01
ATGGCTACTT TTCCTTCTCC CCCTTCACCT TCTTCTTCTT CCTCAATTCC TTCTCCAAGA TCTAGCATGT TTTACTATGC
TAGAAGTGAA AACCACTATG AGGAACCTCA CTTCCTTCAA GCTTGTTTTC TTTGCAGAAA ACCACTAGGC CAAAACCGTG
ACATCTTCAT GTACAGAGGG AACACACCAT TTTGCAGCAA AGATGCAGGC AGGAGCAAAT AG

[show][hide][copy]PROTEIN

>Vigan.09G018700.01
MATFPSPPSP SSSSSIPSPR SSMFYYARSE NHYEEPHFLQ ACFLCRKPLG QNRDIFMYRG NTPFCSKDAG RSK*