GBrowse Details

Vigan.09G020200.01

Basic Information:
Name: Vigan.09G020200.01
Multiple alignment
Variant Information
Position: Chr09:2187914..2190588 (+ strand)
Length: 2675
Functional Information:
Description: Similar to 10 kDa chaperonin-like. [XP_004510137.1, Cicer arietinum]
GO: Biological Process: protein folding (GO:0006457)
Cellular Component: cytoplasm (GO:0005737)
InterPro: GroES (chaperonin 10)-like (IPR011032)
Chaperonin Cpn10 (IPR020818)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.84,43.57,60.03,109.23,50.72,78.35,33.04,42.30
Arabidopsis thaliana homolog: AT3G60210.1
Automatic updates:
Name: NM_001249277 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500567 (LOC100500567), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249521 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306026 (LOC100306026), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:2187914..2188074 (+ strand)
Length: 161
Type: five_prime_UTR
Position: Chr09:2188075..2188177 (+ strand)
Length: 103
Type: CDS
Position: Chr09:2188258..2188316 (+ strand)
Length: 59
Type: CDS
Position: Chr09:2188461..2188511 (+ strand)
Length: 51
Type: CDS
Position: Chr09:2189542..2189607 (+ strand)
Length: 66
Type: CDS
Position: Chr09:2189706..2189753 (+ strand)
Length: 48
Type: CDS
Position: Chr09:2190094..2190123 (+ strand)
Length: 30
Type: CDS
Position: Chr09:2190286..2190354 (+ strand)
Length: 69
Type: CDS
Position: Chr09:2190355..2190588 (+ strand)
Length: 234
Type: three_prime_UTR


>Vigan.09G020200.01
TAGAAGTTTC CTTGTAATAA GTTCTAGTAC TTTCTCAAAT TTCTACAGAT TTTTGGGGCA CTCATTTTGT ATTTTCCTTG
GTCTTTAGCA ATCGAACAGA TAAACCTAAG AGGGTTTAAC CTGGTTTCCT TACTCCATTC TTTGCTGTTT CGAACTGGTG
TATGGTCTCT TCTCTCTTAT CCATGGCATC AACGTTTCTC ACCCTGCCAA CTCCTTTCCT ACACAAAACC AGTGCCATTT
CTTTCTCTAA CAAGAGGCCC TCATTTTCGC AGAGGAGCAC TCTGAAGATC AATGCAATTG CCAAAAAATG GGAACCCACT
AAGGTTGTGC CTCAGGCTGA CAGAGTTCTT ATTCGTTTGG AAGAGCTATC AGAGAAAACA GCTGGGGGAG TTTTGCTGCC
CAAGTCAGCC GTGAAATTTG AGCGATATCT CGTGGGAGAA ATCCTAAATG TTGGTGCTGA GGCTGGAGAA CTAAAGGCTG
GAACAAAGGT ACTATTCACT GACATGAGTG CTTATGAGGT GGATTTGGGG ACTGATGCAA AGCACTGCTT CTGCAAAGCA
AGTGACTTGT TGGCTGTGGT TGAGTAGGGT TTGGCCACTG CATGAAACAC TATTTTTTGA TAATATCTTT GACAAATGTA
TTTTCATTTG AATAAACCCT TTCTCTTAAT TGGTCTAAAA TGTTATATTC CTTTTCTGTT ATAATAACCT GTTGCTTTCC
TTATGTAGTT TCTGAATCAA AACTCTAATC ATACATTTCT GTTCTACCCT TGTTAAAGTT ACATTATCTG TTTATGATTT
GTAGGCTAAA ACATGCTCGT G

>Vigan.09G020200.01
ATGGTCTCTT CTCTCTTATC CATGGCATCA ACGTTTCTCA CCCTGCCAAC TCCTTTCCTA CACAAAACCA GTGCCATTTC
TTTCTCTAAC AAGAGGCCCT CATTTTCGCA GAGGAGCACT CTGAAGATCA ATGCAATTGC CAAAAAATGG GAACCCACTA
AGGTTGTGCC TCAGGCTGAC AGAGTTCTTA TTCGTTTGGA AGAGCTATCA GAGAAAACAG CTGGGGGAGT TTTGCTGCCC
AAGTCAGCCG TGAAATTTGA GCGATATCTC GTGGGAGAAA TCCTAAATGT TGGTGCTGAG GCTGGAGAAC TAAAGGCTGG
AACAAAGGTA CTATTCACTG ACATGAGTGC TTATGAGGTG GATTTGGGGA CTGATGCAAA GCACTGCTTC TGCAAAGCAA
GTGACTTGTT GGCTGTGGTT GAGTAG

>Vigan.09G020200.01
MVSSLLSMAS TFLTLPTPFL HKTSAISFSN KRPSFSQRST LKINAIAKKW EPTKVVPQAD RVLIRLEELS EKTAGGVLLP
KSAVKFERYL VGEILNVGAE AGELKAGTKV LFTDMSAYEV DLGTDAKHCF CKASDLLAVV E*