GBrowse Details

Vigan.09G021100.01

Basic Information:
Name: Vigan.09G021100.01
Multiple alignment
Variant Information
Position: Chr09:2322193..2324557 (+ strand)
Length: 2365
Functional Information:
Description: Similar to Uncharacterized protein. [I1L2M0, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:46.48,27.66,19.80,26.16,27.05,23.54,20.65,22.04
Automatic updates:
Name: NM_001255744 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MKI67 FHA domain-interacting nucleolar phosphoprotein-like (LOC100814276), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:2322193..2322314 (+ strand)
Length: 122
Type: five_prime_UTR
Position: Chr09:2322315..2322398 (+ strand)
Length: 84
Type: CDS
Position: Chr09:2322509..2322623 (+ strand)
Length: 115
Type: CDS
Position: Chr09:2322698..2322753 (+ strand)
Length: 56
Type: CDS
Position: Chr09:2323354..2323401 (+ strand)
Length: 48
Type: CDS
Position: Chr09:2323484..2323581 (+ strand)
Length: 98
Type: CDS
Position: Chr09:2323860..2323929 (+ strand)
Length: 70
Type: CDS
Position: Chr09:2324017..2324199 (+ strand)
Length: 183
Type: CDS
Position: Chr09:2324200..2324557 (+ strand)
Length: 358
Type: three_prime_UTR


>Vigan.09G021100.01
ATCAGCCTTA AAATATTGAG TCTGATAGAC CTGGGTTAGG GTTTTAACGC AATCCCTCGC CACCCTCGTT TACTATATCT
TGTTTCTTTG CAGAGAAGTA GTTAGGCATA ACAGACAGTG AGATGGGAAC AAAGGCAAAG AAAGCTATGA AGAAGAACAT
GAAAAAGGCT TCCTCTAACA AGCCATCTGA GGGTGCTGAT TTTTTGCCCT TGGAAGGTGG TCCTGCTCGC AAGCTCGCCG
AACAGAAGCC GCCGGAGAAT ACCTCCACGG TATTGTACGT ATCCAGGATT CCGCATGGAT TCTATGAGAA GGAGATGGAA
GGTTATTTTG GTCAATTTGG AACCATCAAA AGGTTGAGAA TCGCGAGAAA TAAAAAGACA GGAAAATCAA GACATTTTGG
GTACATAGAA TTTGAATCTC CTGAGGTTGC GAAAATTGTA GCTGATACTA TGCACAATTA TCTCCTTTTC GAGCACCTTC
TCCAAGTTCA TGTTGTACCT CCGGAGAATG TTCATTCAAG ATTATGGAGA GGATTCAGTT ATCGTCACAA GCCATTGGAT
TATGTCCAAA TTGAACGGAA GCGTCATGAC AAGGAAAGAA CCTTAGACGA GCACAAAAAA TTGGTGGAGA GGATTCTAAA
ACATGACCAA AAACGACGGA AAAGGATAGA GGCTGCTGGC ATTGATTACG AAAGCCCTGA GATTGTGAGC CTTTTGCTTT
TATCATTCTG TGGTGGTTCA TTTCTTTTCA CAAATAGAGA ATATTCTGCA TCTTGAGTTT TGCTCTCATT TTGCATATAT
AATTGTTCTT TGCAGATGGG TAACATCCAG CCTGCTCCAA AGAAAATAAA GTTTGATGAC TGAGTTGGTA ACCTGGAACA
CAGGAGTCTG CTGGTTTAGG ATTTTTAGTT TTAATATTTT CGCAGTTTTG GAACTTAGTT CTGAAACCTT GTATCCGTCA
AATGTTTACA GGAAGCATGA TCCATTTTAT ATATTCATAA ACTTTTTAAG CAGTTGATCA CCTTCAGGCT CATTACTGTT
TTACTTCTTT TTTGGTCTTC AATTGCACTC TTAATTAGAG TTTGCGCACA TTTATTGCTT CGTTTTTTAA TTTTTGTTAA
CATTGACAAT CTGG

>Vigan.09G021100.01
ATGGGAACAA AGGCAAAGAA AGCTATGAAG AAGAACATGA AAAAGGCTTC CTCTAACAAG CCATCTGAGG GTGCTGATTT
TTTGCCCTTG GAAGGTGGTC CTGCTCGCAA GCTCGCCGAA CAGAAGCCGC CGGAGAATAC CTCCACGGTA TTGTACGTAT
CCAGGATTCC GCATGGATTC TATGAGAAGG AGATGGAAGG TTATTTTGGT CAATTTGGAA CCATCAAAAG GTTGAGAATC
GCGAGAAATA AAAAGACAGG AAAATCAAGA CATTTTGGGT ACATAGAATT TGAATCTCCT GAGGTTGCGA AAATTGTAGC
TGATACTATG CACAATTATC TCCTTTTCGA GCACCTTCTC CAAGTTCATG TTGTACCTCC GGAGAATGTT CATTCAAGAT
TATGGAGAGG ATTCAGTTAT CGTCACAAGC CATTGGATTA TGTCCAAATT GAACGGAAGC GTCATGACAA GGAAAGAACC
TTAGACGAGC ACAAAAAATT GGTGGAGAGG ATTCTAAAAC ATGACCAAAA ACGACGGAAA AGGATAGAGG CTGCTGGCAT
TGATTACGAA AGCCCTGAGA TTGTGAGCCT TTTGCTTTTA TCATTCTGTG GTGGTTCATT TCTTTTCACA AATAGAGAAT
ATTCTGCATC TTGA

>Vigan.09G021100.01
MGTKAKKAMK KNMKKASSNK PSEGADFLPL EGGPARKLAE QKPPENTSTV LYVSRIPHGF YEKEMEGYFG QFGTIKRLRI
ARNKKTGKSR HFGYIEFESP EVAKIVADTM HNYLLFEHLL QVHVVPPENV HSRLWRGFSY RHKPLDYVQI ERKRHDKERT
LDEHKKLVER ILKHDQKRRK RIEAAGIDYE SPEIVSLLLL SFCGGSFLFT NREYSAS*