GBrowse Details

Vigan.09G022400.01

Basic Information:
Name: Vigan.09G022400.01
Multiple alignment
Variant Information
Position: Chr09:2531941..2536987 (- strand)
Length: 5047
Functional Information:
Description: Similar to NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like. [XP_004510155.1, Cicer arietinum]
InterPro: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 (IPR007523)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:107.21,77.13,16.92,19.82,28.34,28.27,25.11,13.34
Arabidopsis thaliana homolog: AT2G44525.1
Automatic updates:
Name: NM_001253037 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100816956 (LOC100816956), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:2531941..2532444 (- strand)
Length: 504
Type: three_prime_UTR
Position: Chr09:2532445..2532531 (- strand)
Length: 87
Type: CDS
Position: Chr09:2533569..2533669 (- strand)
Length: 101
Type: CDS
Position: Chr09:2534222..2534256 (- strand)
Length: 35
Type: CDS
Position: Chr09:2535720..2535836 (- strand)
Length: 117
Type: CDS
Position: Chr09:2536647..2536825 (- strand)
Length: 179
Type: CDS
Position: Chr09:2536826..2536987 (- strand)
Length: 162
Type: five_prime_UTR


>Vigan.09G022400.01
GATTTTTTTC TCTCACTTGC TTTGGTAATT GCTTTTACAA AGAATCATTA AACTCTTCAA TCATGTAATT AAACAAACAA
TAATAAAATT GAAAATGGCT TGAGGGAAGG GTGGAGAAGA ACCGAGTTCG TTTGGTGCTG GAAAGAGCAA GACACACAAG
GCATGGCGGT TAGGCAAAGA GCAGTATCTG CACTTCCAAC CCTTTTACGC ACTCTTCGGA AAGAACCGTT AAAGCCTCAC
AGTCATGTCA ACGCGTTACC CTCTCTTCGA CGCGCTTTCT CTTTGTACGA TCAGATCAAC CTCATCGATC AAGTCCCCGA
AGACCAGCTC CGATTTCAAG GGTATAATGA TACGGGGTTT ACGGTAAATG GGGTTGAGTA TGAAGGAAGC TTACTTTGTG
TTGGAAATTT GCTCATGTCT TGGAAACCTA AGAAGTTTTC AGAGATCACT GCTGATAGCT TGTCACTCTT CCAAGTTATT
CGCCCTATTC CAGAGATTTT GATTCTTGGC TGTGGAAGGA ACATTCAACA TGTAGATCCT GAACTGAGAC GGTTTATACG
ATCTACTGGC ATGAAATTAG AAGCTGTAGA TTCGAGAAAT GCAGCATCAA CTTACAACAT ACTGAATGAA GAAGGTCGAA
TTGTGGCTGC TGCACTTCTT CCACATGGAG TTTCTGCATG AAGCCTGGAC TGTTCACATC CATTCCATTA AGGATCTTAA
CCCAATACTT TGAGACATGC TTTGATTTTC ACGTTTAGAA AGTTTTGACA TAGCAATAGC ACAATGTGAA TCAAACTCAA
CATAGTCCTT TGATGTCTGC TAAGGCTTTC AAGAGTAATA AAGAGAATTG AAATGTATAG ACTGCAGCAA ATCCCTGCAA
ATTTGGACTC TAGTTACTTA CTGGTTCTTT GGCTTGAATG CTATCTCACT TTCTCAAGAG TTAATGCTAT TTTACTTTCT
CAAGAGTTGA AAGGAAAATG GCTTGAATCA AACCTTAACT TTTACTGTCC CAATAAACCC TTTATGGTTT GTCTGGATGA
GATAAAGGAA AATGGAAAAG ATCATATGCT ATTATGCGTG CTTGGACGAT CTACAAAAAC ACTTTTTGCA TAGAGAAATG
ATAGTTCTCC ATGAAAGTAT TTGTTACATA ATCTATGCAA TATTGGAGTT TAACATCATT ATGGA

>Vigan.09G022400.01
ATGGCGGTTA GGCAAAGAGC AGTATCTGCA CTTCCAACCC TTTTACGCAC TCTTCGGAAA GAACCGTTAA AGCCTCACAG
TCATGTCAAC GCGTTACCCT CTCTTCGACG CGCTTTCTCT TTGTACGATC AGATCAACCT CATCGATCAA GTCCCCGAAG
ACCAGCTCCG ATTTCAAGGG TATAATGATA CGGGGTTTAC GGTAAATGGG GTTGAGTATG AAGGAAGCTT ACTTTGTGTT
GGAAATTTGC TCATGTCTTG GAAACCTAAG AAGTTTTCAG AGATCACTGC TGATAGCTTG TCACTCTTCC AAGTTATTCG
CCCTATTCCA GAGATTTTGA TTCTTGGCTG TGGAAGGAAC ATTCAACATG TAGATCCTGA ACTGAGACGG TTTATACGAT
CTACTGGCAT GAAATTAGAA GCTGTAGATT CGAGAAATGC AGCATCAACT TACAACATAC TGAATGAAGA AGGTCGAATT
GTGGCTGCTG CACTTCTTCC ACATGGAGTT TCTGCATGA

>Vigan.09G022400.01
MAVRQRAVSA LPTLLRTLRK EPLKPHSHVN ALPSLRRAFS LYDQINLIDQ VPEDQLRFQG YNDTGFTVNG VEYEGSLLCV
GNLLMSWKPK KFSEITADSL SLFQVIRPIP EILILGCGRN IQHVDPELRR FIRSTGMKLE AVDSRNAAST YNILNEEGRI
VAAALLPHGV SA*