VIGGS:GBrowse

Vigan.09G024700.01

Basic Information:

Name:	Vigan.09G024700.01 Multiple alignment Variant Information
Position:	Chr09:2721012..2726126 (+ strand)
Length:	5115

Functional Information:

Description:	Similar to Calcium-binding EF hand family protein. [XP_007029833.1, Theobroma cacao]
GO:	Molecular Function: calcium ion binding (GO:0005509)
InterPro:	EF-hand domain (IPR002048)
InterPro:	EF-hand domain pair (IPR011992)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:13.89,6.79,6.05,15.68,3.80,9.80,6.31,9.82
Arabidopsis thaliana homolog:	AT1G64850.1

Automatic updates:

Name:	NM_001248981 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100526914 (LOC100526914), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001251509 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527595 (LOC100527595), transcript variant 2, mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:2721012..2721172 (+ strand)
Length:	161
Type:	five_prime_UTR

Position:	Chr09:2721173..2721200 (+ strand)
Length:	28
Type:	CDS

Position:	Chr09:2722509..2722635 (+ strand)
Length:	127
Type:	CDS

Position:	Chr09:2722752..2722824 (+ strand)
Length:	73
Type:	CDS

Position:	Chr09:2725395..2725667 (+ strand)
Length:	273
Type:	CDS

Position:	Chr09:2725668..2726126 (+ strand)
Length:	459
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G024700.01
AAAAGAAAAC AAAAACAAAA TGATGAGATG TCTGATTTTA GATTCTGCAA AGGATTAACG TAAGTTTGAT TTCATAGTAT
ATATTATTGT GCCTTAAATC TATCACCACA ACCACGCAGA CAAAGCTTCA TATCTGAGAG ACTTGTTTGT GGTATCACAG
CATGGGACAA GTATTTGACA AGTTAGATGG TAAGGAGTGG AGGAAAAGGC AAATAAGAAA GATAACAGAT CAAGTTTTTG
AAAAAGTACA GAATCAAAAG GAAAGTGATA AGTTGAGTTT TGAAGATCTG TATATTGCTG TCTTACTCGT GTACAATGAT
ATCAACAAGT ATATACCTGG TCCCCATTTT GACCCTCCAT CAAAAGCCAG AGTCAAAGAA GTCAAAGAGA AATGTGATAT
CAACCTTGAT GGGGATATTG ACCGTGAAGA ATTTTTCGAC TTCATCCTGC AAATGACAGC TGATACATTC ACTGTTGTTA
GCCAAAAACT TATTGTCACT ATGGTTGTAG CACCAACAGT TGCAGTGGCA ACAAAGAGAG CCACTGAGGG TGTTCCATAT
GTTGGGAAAG TGGTGAAGAA GATACCGAAT TCAGTTTATG CTTCCCTTGT AACCATTGCA GCTGTGTGGT TCCAGAAAAA
GGCTCAAAGT TCTTCACTGT AGCCATTGCT CATCAAGTCT TTCACAAAGA ATGCTCGAAT TCTCTTGATT CTGTACATAG
GATTGAAACT GTATCCATGT TAGATATAAA ATGACAATTG ATAAAAGAGT TAACTATGTT TTTATTCCTA AACCATAAGG
CAAATTTGGT TTTTTCCCTC TCTCAAACTT TAATCTTGTT ATGTCCTTAT ACTTAAAGAA AGACATATAT GTAATAATTT
TTGTCCATTA GCGTTAATTG TTTTTTGACG TGATAAACGA CAAATCACAT TAGATGCAAT CCATAAGATC TTTTCATGTC
AACGTCTTAA AAAATCTAAC GTGATTTGTA GTTTTTCATG CTAAAATATA ATTAACATTA TTGGGTGAGA AGAATTATAT
TCATGCATTT CTTAATTATA AGGATTTAAC ATGATCAAAA TTTGAGATAG AAACAAAAAT CAAAATCATA TTATAATTTA
G

[show][hide][copy]CDS

>Vigan.09G024700.01
ATGGGACAAG TATTTGACAA GTTAGATGGT AAGGAGTGGA GGAAAAGGCA AATAAGAAAG ATAACAGATC AAGTTTTTGA
AAAAGTACAG AATCAAAAGG AAAGTGATAA GTTGAGTTTT GAAGATCTGT ATATTGCTGT CTTACTCGTG TACAATGATA
TCAACAAGTA TATACCTGGT CCCCATTTTG ACCCTCCATC AAAAGCCAGA GTCAAAGAAG TCAAAGAGAA ATGTGATATC
AACCTTGATG GGGATATTGA CCGTGAAGAA TTTTTCGACT TCATCCTGCA AATGACAGCT GATACATTCA CTGTTGTTAG
CCAAAAACTT ATTGTCACTA TGGTTGTAGC ACCAACAGTT GCAGTGGCAA CAAAGAGAGC CACTGAGGGT GTTCCATATG
TTGGGAAAGT GGTGAAGAAG ATACCGAATT CAGTTTATGC TTCCCTTGTA ACCATTGCAG CTGTGTGGTT CCAGAAAAAG
GCTCAAAGTT CTTCACTGTA G

[show][hide][copy]PROTEIN

>Vigan.09G024700.01
MGQVFDKLDG KEWRKRQIRK ITDQVFEKVQ NQKESDKLSF EDLYIAVLLV YNDINKYIPG PHFDPPSKAR VKEVKEKCDI
NLDGDIDREE FFDFILQMTA DTFTVVSQKL IVTMVVAPTV AVATKRATEG VPYVGKVVKK IPNSVYASLV TIAAVWFQKK
AQSSSL*