VIGGS:GBrowse

Vigan.09G029300.01

Basic Information:

Name:	Vigan.09G029300.01 Multiple alignment Variant Information
Position:	Chr09:3299881..3303817 (- strand)
Length:	3937

Functional Information:

Description:	Similar to 5-hydroxyisourate hydrolase. [I1MM35, Glycine max]
GO:	Biological Process: purine nucleobase metabolic process (GO:0006144)
	Biological Process: transport (GO:0006810)
	Molecular Function: hydroxyisourate hydrolase activity (GO:0033971)
InterPro:	Transthyretin/hydroxyisourate hydrolase (IPR000895)
	Hydroxyisourate hydrolase (IPR014306)
	Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (IPR018020)
	Transthyretin/hydroxyisourate hydrolase, superfamily (IPR023416)
	Transthyretin, thyroxine binding site (IPR023418)
	Transthyretin, conserved site (IPR023419)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.20,7.41,12.04,7.67,192.27,39.44,19.08,14.57
Arabidopsis thaliana homolog:	AT5G58220.1

Automatic updates:

Name:	NM_001252922 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uric acid degradation bifunctional protein TTL-like (LOC100805930), transcript variant 1, mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001255538 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative transthyretin-like S-allantoin synthase (LOC100788368), transcript variant 1, mRNA.
PubMed ID:	21667246 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:3299881..3300092 (- strand)
Length:	212
Type:	three_prime_UTR

Position:	Chr09:3300093..3300550 (- strand)
Length:	458
Type:	CDS

Position:	Chr09:3301257..3301407 (- strand)
Length:	151
Type:	CDS

Position:	Chr09:3301748..3301849 (- strand)
Length:	102
Type:	CDS

Position:	Chr09:3302231..3302288 (- strand)
Length:	58
Type:	CDS

Position:	Chr09:3303397..3303626 (- strand)
Length:	230
Type:	CDS

Position:	Chr09:3303627..3303817 (- strand)
Length:	191
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G029300.01
CTTGTGCTGG CCAAAAGAAC ATTTCTACGT GGCTTTTTGT TTGCATCGCA AGAACAAGAC TAAGTGCTGA CACAGCGTCA
CATCCTCTTC TCTTCTCTTC TCTTCTCTTC CCACGAACAA ATCATAAAAA CAGTCCAATT CCAATATAAT TGTCAAAAAC
ACAAGCGAAC AGAGTGATTA GTGTTTGAAG AATGGAGTTC AGTTTCGACG AGAAAGACTT CGTATCGTGC TGTGGAAGCA
CCAAATTCGC CAAGGACATG GTTTTGGCTT CTCCTTTCAG TTCATTGCAG CACGCTGTTT CTGTGGCGAG GGATGTTTGG
TTCAACAACG TTGATGTCAA CGGTTGGCTT CAGGCCTTCT CTGCCCACCC TCAGATCGGG AATACCCATG CTCCATCTGT
TGCCTCTGAA GCCAGTGCTC ATTGGAGTAA AGGAGAGCAA TCAACTGCTT TATCTACTGC AACTGGTTCC AGCTTACAGG
AACTATCTCA ATGGAATGCT CGGTACAGGG AAAAGTTTGG GTTTGTTTTT CTCATTTGTG CATCTGGCAG AACCACGGAT
GAGATACTTG CTGAGCTGAA GAGACGATAT ACAAACCGGC CCATTGTTGA GTTTGAGATT GCTGCTCAGG AGCAAATGAA
AATTACAGAA CTACGCCTTG CAAAGCTCTT TTCAAGTACA GAAGACATTT CTTCTAAAAT TGGAAATTAT TCCACTGCTA
AAAAGGCAGA AGAAGATCGC ATTAGCATCA TCAGTAGTCA TGTGACTGCT GCTTCAGAGA GTTCATCAGG TAAACCAATT
CAACATCCTG CAAGAACTCG CCCTCCAATT ACCACTCATG TGTTGGATGT GTCGCGGGGC TCTCCGGCCG CCGGTATTGA
GGTGCTTCTG GAGCTGTGGA GGGGTGTTCA GCCTCGGCCG ACATTTGGGG CCACAGGCGG AGGCAATTGG GTGTTTCAGG
GGTCATCGAC GACGGATCAA GACGGCCGAA GCGGTCAACT GCTGAGCATA GTTGACGATG TGAATCCAGG AATATACAGG
ATAAGTTTCA ACACTGGGAA GTACATCCCA AATGGTTTCT TTCCTTATGT GTCTATAGTG TTTGAAATCA AGGATTCACA
AAAAAGGGAA CATTTTCATG TTCCTCTTCT GCTTGCTCCA TTCTCATTCA GCACTTACCG TGGAAGCTAG GAATAGAGGA
ACAGTTGCCA AATGAATGCC ACATTGTGTT TGTGACCATA GAACTTGGTA GAAAAAGGTA CCAAATTTAG ATAGCTAATA
AGTGTAGAAT CCTTGAGTTA ATGCATGTTA TATAAGTTCT TTTGAATCAA CAATCGAGAC TTGCAATATT TGAGACATGA
CTTCAATATT TAAATACCAC ATTTATAGTG CATGAACAAG GG

[show][hide][copy]CDS

>Vigan.09G029300.01
ATGGAGTTCA GTTTCGACGA GAAAGACTTC GTATCGTGCT GTGGAAGCAC CAAATTCGCC AAGGACATGG TTTTGGCTTC
TCCTTTCAGT TCATTGCAGC ACGCTGTTTC TGTGGCGAGG GATGTTTGGT TCAACAACGT TGATGTCAAC GGTTGGCTTC
AGGCCTTCTC TGCCCACCCT CAGATCGGGA ATACCCATGC TCCATCTGTT GCCTCTGAAG CCAGTGCTCA TTGGAGTAAA
GGAGAGCAAT CAACTGCTTT ATCTACTGCA ACTGGTTCCA GCTTACAGGA ACTATCTCAA TGGAATGCTC GGTACAGGGA
AAAGTTTGGG TTTGTTTTTC TCATTTGTGC ATCTGGCAGA ACCACGGATG AGATACTTGC TGAGCTGAAG AGACGATATA
CAAACCGGCC CATTGTTGAG TTTGAGATTG CTGCTCAGGA GCAAATGAAA ATTACAGAAC TACGCCTTGC AAAGCTCTTT
TCAAGTACAG AAGACATTTC TTCTAAAATT GGAAATTATT CCACTGCTAA AAAGGCAGAA GAAGATCGCA TTAGCATCAT
CAGTAGTCAT GTGACTGCTG CTTCAGAGAG TTCATCAGGT AAACCAATTC AACATCCTGC AAGAACTCGC CCTCCAATTA
CCACTCATGT GTTGGATGTG TCGCGGGGCT CTCCGGCCGC CGGTATTGAG GTGCTTCTGG AGCTGTGGAG GGGTGTTCAG
CCTCGGCCGA CATTTGGGGC CACAGGCGGA GGCAATTGGG TGTTTCAGGG GTCATCGACG ACGGATCAAG ACGGCCGAAG
CGGTCAACTG CTGAGCATAG TTGACGATGT GAATCCAGGA ATATACAGGA TAAGTTTCAA CACTGGGAAG TACATCCCAA
ATGGTTTCTT TCCTTATGTG TCTATAGTGT TTGAAATCAA GGATTCACAA AAAAGGGAAC ATTTTCATGT TCCTCTTCTG
CTTGCTCCAT TCTCATTCAG CACTTACCGT GGAAGCTAG

[show][hide][copy]PROTEIN

>Vigan.09G029300.01
MEFSFDEKDF VSCCGSTKFA KDMVLASPFS SLQHAVSVAR DVWFNNVDVN GWLQAFSAHP QIGNTHAPSV ASEASAHWSK
GEQSTALSTA TGSSLQELSQ WNARYREKFG FVFLICASGR TTDEILAELK RRYTNRPIVE FEIAAQEQMK ITELRLAKLF
SSTEDISSKI GNYSTAKKAE EDRISIISSH VTAASESSSG KPIQHPARTR PPITTHVLDV SRGSPAAGIE VLLELWRGVQ
PRPTFGATGG GNWVFQGSST TDQDGRSGQL LSIVDDVNPG IYRISFNTGK YIPNGFFPYV SIVFEIKDSQ KREHFHVPLL
LAPFSFSTYR GS*