VIGGS:GBrowse

Vigan.09G032900.01

Basic Information:

Name:	Vigan.09G032900.01 Multiple alignment Variant Information
Position:	Chr09:3786369..3788677 (- strand)
Length:	2309

Functional Information:

Description:	Similar to dCTP pyrophosphatase 1-like. [XP_002266481.2, Vitis vinifera]
InterPro:	NTP pyrophosphohydrolase MazG, putative catalytic core (IPR004518)
	EAR (IPR009039)
	NTP Pyrophosphohydrolase MazG-related, RS21-C6 (IPR011394)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,2.55,14.71,1.54,0.56,62.97,2.34,0.89
Arabidopsis thaliana homolog:	AT3G25400.1

Automatic updates:

Name:	NM_001251774 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306684 (LOC100306684), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:3786369..3786565 (- strand)
Length:	197
Type:	three_prime_UTR

Position:	Chr09:3786566..3786841 (- strand)
Length:	276
Type:	CDS

Position:	Chr09:3788495..3788617 (- strand)
Length:	123
Type:	CDS

Position:	Chr09:3788618..3788677 (- strand)
Length:	60
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G032900.01
ATTCTCATCT CTCTCTCTCT CTGTTCTCAT CATCATTTTC ATTCTCTCTG CTCTGAAAAC ATGACTGGGG TTTCTGAAAA
AGCAGCTGTT TCTCTTGATC AGCTTAAGGA GATTATGAGT GAGTTTGCAA AGGAGAGGGA TTGGGAGCAG TTTCATAGCC
CAAGGAACCT CCTTTTGGCT TTGGTGGGTG AAATGGGAGA ATTGTGTGAG ATATTTCAAT GGAAAGGAGA GGTTCCAAAG
GGTCTTCCAG ATTGGAAAGA AGAAGAAAAG GTTCATCTTG GAGAAGAACT TTCAGATGTG TTGCTTTATC TTGTGAGGCT
CTCTGACATG TGTGGTGTTG ATCTTGGCAA AGCTGCTTTG AGAAAGGTTG AACTGAATGC CATTAAATAC CCTAAAAAAG
TTTCTGAAAA AGAGCCTTCA ATCAGCACCA AAGAAGATGA AAATTTAGAA GGTGTTTGAT GAAATTGCAT TTTGTGTTTT
GGGAGGAACA GTGGGAAAGT GGTTTTGGTA TATGTTCTTC TATAAAGGGT GGAGGCTATT ATTGTTGGAT TGTTTTGGTA
CTAATTTATT CTCTTACCTT TGGCATATTG AATATTATTG AACTGTGTTT TTCTTTTGAA CATGTTTTAA GAGAATTCAA
TTTCACCTTT TTATGA

[show][hide][copy]CDS

>Vigan.09G032900.01
ATGACTGGGG TTTCTGAAAA AGCAGCTGTT TCTCTTGATC AGCTTAAGGA GATTATGAGT GAGTTTGCAA AGGAGAGGGA
TTGGGAGCAG TTTCATAGCC CAAGGAACCT CCTTTTGGCT TTGGTGGGTG AAATGGGAGA ATTGTGTGAG ATATTTCAAT
GGAAAGGAGA GGTTCCAAAG GGTCTTCCAG ATTGGAAAGA AGAAGAAAAG GTTCATCTTG GAGAAGAACT TTCAGATGTG
TTGCTTTATC TTGTGAGGCT CTCTGACATG TGTGGTGTTG ATCTTGGCAA AGCTGCTTTG AGAAAGGTTG AACTGAATGC
CATTAAATAC CCTAAAAAAG TTTCTGAAAA AGAGCCTTCA ATCAGCACCA AAGAAGATGA AAATTTAGAA GGTGTTTGA

[show][hide][copy]PROTEIN

>Vigan.09G032900.01
MTGVSEKAAV SLDQLKEIMS EFAKERDWEQ FHSPRNLLLA LVGEMGELCE IFQWKGEVPK GLPDWKEEEK VHLGEELSDV
LLYLVRLSDM CGVDLGKAAL RKVELNAIKY PKKVSEKEPS ISTKEDENLE GV*