GBrowse Details

Vigan.09G034300.01

Basic Information:
Name: Vigan.09G034300.01
Multiple alignment
Variant Information
Position: Chr09:4007596..4011848 (+ strand)
Length: 4253
Functional Information:
Description: Similar to Uncharacterized protein. [G7LF25, Medicago truncatula]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
InterPro: RNA polymerase II, Rpb4 (IPR005574)
RNA polymerase II, Rpb4, core (IPR006590)
HRDC-like (IPR010997)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:98.84,44.89,69.17,65.58,90.90,71.07,73.16,53.46
Arabidopsis thaliana homolog: AT5G09920.1
Automatic updates:
Name: NM_001251008 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499661 (LOC100499661), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251144 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DNA-directed RNA polymerase II subunit (LOC100527316), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:4007596..4007729 (+ strand)
Length: 134
Type: five_prime_UTR
Position: Chr09:4007730..4007778 (+ strand)
Length: 49
Type: CDS
Position: Chr09:4009020..4009128 (+ strand)
Length: 109
Type: CDS
Position: Chr09:4009461..4009538 (+ strand)
Length: 78
Type: CDS
Position: Chr09:4009828..4009861 (+ strand)
Length: 34
Type: CDS
Position: Chr09:4010055..4010123 (+ strand)
Length: 69
Type: CDS
Position: Chr09:4011413..4011490 (+ strand)
Length: 78
Type: CDS
Position: Chr09:4011491..4011848 (+ strand)
Length: 358
Type: three_prime_UTR


>Vigan.09G034300.01
ATTCAAACAG AAAAGCTGAA TCCCTCGTTG TCATTCTTTT TTCGGTATTC CTCTTCACGC GCTCCCTCTC CTTCGTTCTT
CTACTCGCTG TTTCTGCATC TGTTTCGTCT CACATACCGG AAAGTCTCTG AAACATGTCT GGGGAAGAGG AAGAAAACGC
CGCAGAGCTC AAAATTGGAG ATGAGTTTTT GAAGGCAAAG TGCTTAATGA ACTGTGAAGT TTCATTGATT CTTGAGCACA
AGTACGAGCA ACTTCAACAG ACATCTGATG ATCCCATGAA TCAAGTTTCT CAGGTATTTG AAAAGTCCTT GCAGTATGTG
AAGCGATTCA GCCGCTATAA AAATCCAGAT GCTGTTAGAC AAGTTCGAGA AATACTTGCA AGATATCAAT TGGCTGAGTT
TGAGTTGTGT GTCCTTGGCA ACCTTTGCCC AGAAACTGTG GAGGAAGCCA TTGCTATGGT TCCATCTATC AAGACAAGAG
GACGGGCTCA GGATGATGAA GCAATTGAGA AAATGCTGAA TGACTTGTCA TTGATTAAGA AATTTGAATA AATATTTCTT
ACAGTGGGTG TATGATATAA CGTTACTAAA TAAGTTTATG TAATATGATG GAGTGCAATC TTGCAAAAAC TCCATCTAAG
TAAAATATAA AACGGATAAG GAGTAAAAAC AAGGCTTCTG TTGATGGAAT AACTTTGTTC CGGCATATCG TTGGTAGCTT
GAGGTTTATT TGTCACAGAC CAAAAATTGA TCTTAATGTT GGACTTGTTA GTAGATTCAT GAATGATCCT AAACAATCAC
ATCTCTTAGC TACTTAGAGA ATTATGAGAT ATCTAAAAGA GAACTCTTGG ATATGGAATT ATTTTCCCTC ATCAATGATA
ATTTTCTAAA TCTTTACTCT CGTTTCCAA

>Vigan.09G034300.01
ATGTCTGGGG AAGAGGAAGA AAACGCCGCA GAGCTCAAAA TTGGAGATGA GTTTTTGAAG GCAAAGTGCT TAATGAACTG
TGAAGTTTCA TTGATTCTTG AGCACAAGTA CGAGCAACTT CAACAGACAT CTGATGATCC CATGAATCAA GTTTCTCAGG
TATTTGAAAA GTCCTTGCAG TATGTGAAGC GATTCAGCCG CTATAAAAAT CCAGATGCTG TTAGACAAGT TCGAGAAATA
CTTGCAAGAT ATCAATTGGC TGAGTTTGAG TTGTGTGTCC TTGGCAACCT TTGCCCAGAA ACTGTGGAGG AAGCCATTGC
TATGGTTCCA TCTATCAAGA CAAGAGGACG GGCTCAGGAT GATGAAGCAA TTGAGAAAAT GCTGAATGAC TTGTCATTGA
TTAAGAAATT TGAATAA

>Vigan.09G034300.01
MSGEEEENAA ELKIGDEFLK AKCLMNCEVS LILEHKYEQL QQTSDDPMNQ VSQVFEKSLQ YVKRFSRYKN PDAVRQVREI
LARYQLAEFE LCVLGNLCPE TVEEAIAMVP SIKTRGRAQD DEAIEKMLND LSLIKKFE*