GBrowse Details

Vigan.09G039200.01

Basic Information:
Name: Vigan.09G039200.01
Multiple alignment
Variant Information
Position: Chr09:4537425..4540084 (- strand)
Length: 2660
Functional Information:
Description: Similar to 40S ribosomal protein S8. [V7APP2, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S8e (IPR001047)
Ribosomal protein S8e, conserved site (IPR018283)
Ribosomal protein S8e/ribosomal biogenesis NSA2 (IPR022309)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:341.65,428.42,196.84,104.45,297.50,377.22,219.92,141.29
Automatic updates:
Name: BT092526 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-11K23 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:4537425..4537749 (- strand)
Length: 325
Type: three_prime_UTR
Position: Chr09:4537750..4537825 (- strand)
Length: 76
Type: CDS
Position: Chr09:4537910..4538082 (- strand)
Length: 173
Type: CDS
Position: Chr09:4538483..4538813 (- strand)
Length: 331
Type: CDS
Position: Chr09:4539757..4539926 (- strand)
Length: 170
Type: CDS
Position: Chr09:4539927..4540084 (- strand)
Length: 158
Type: five_prime_UTR


>Vigan.09G039200.01
CCGGGAGAGT GGAGTTGGAT CAGCAAAAGG TAGGGTTTCG TTTGTTGAAA TATATAAGGC GTAATATTAG GGTTTTTTCA
GGGAGCCAAG AAGCAGAGAG ATACAATACA GAGTGTGTTG TTGCTTCTTC GCCACAACTC AACAACATGG GTCAGTAGAT
GCTTCCCTCA AATCTTTCTT TCGTTGATAT TGCAAACGAA AACCCTAATT CCATCTTTTC TAATGGGATT TCTTATTCTT
CTTCTTCTGA ATCAGGTATC TCCAGAGATT CTATGCACAA GAGGCGTGCC ACTGGTGGCA AGAAGAAGGC CTGGAGGAAA
AAGAGAAAGT ATGAGCTTGG TCGCCAGCCT GCTAACACTA AGCTGTCAAG CAACAAGACT GTCAGGAGGA TCCGTGTTAG
AGGTGGCAAT GTGAAGTGGA GAGCACTGAG ATTGGATACT GGAAACTACT CTTGGGGAAG TGAAGCTGTA ACTCGCAAGA
CTCGTATACT TGATGTGGTA TACAACGCCT CAAACAATGA GCTTGTGCGT ACTCAGACCC TTGTCAAAAG TGCTATTGTT
CAGGTTGATG CCGCTCCCTT CAAACAGTGG TATCTTCAGC ACTATGGTGT TGACATTGGT AGGAAGAAGA AGACAGCTGC
AAAGAAGGAT TCCGCAGAGG AGGGTGACGC TGCAGCAGCA GAAGAAGCCA AAAAGAGTAA CCATGTGCAA AGAAAACTAG
AAAAGCGCCA GAAGGATCGC AAGCTTGATG CTCACATTGA GGAGCAGTTT GGTGGTGGTC GTTTACTTGC TTGCATTTCC
TCTCGACCTG GTCAATGTGG CAGATCTGAT GGCTACATTC TGGAAGGTAA AGAGTTGGAA TTTTACATGA AGAAACTCCA
GAAGAAGAAG GGGAAAGGTG CTGCCTGATT TTAGGTTTTC CCCAATTTTT ATATATGGCT TTAGTCGTTT TTATTTGTTG
CTGGTACCAT TCATGCAGAT GTTTTGTGCC ACAGGACATT TAGTGCAAAC TATCATCCTA GTATTTCAAA TTGACACTTA
ATTTTGTTTT TAACTGTTTT TTGCTTCTGA TGAGTTACAA TTTTATAAAT GAATGTCTTT TAATCCTTAT TGTTGGGGTA
GTCAGGGAAG GTGTCTTCAA TATAAATGTG AAGATATATC AGATAGGTTC CTCTCTTTTT TAAAATAAGC AGTATGATTT
AATATTAACA ATCTTATTTA GATTTTATTT AGA

>Vigan.09G039200.01
ATGCTTCCCT CAAATCTTTC TTTCGTTGAT ATTGCAAACG AAAACCCTAA TTCCATCTTT TCTAATGGGA TTTCTTATTC
TTCTTCTTCT GAATCAGGTA TCTCCAGAGA TTCTATGCAC AAGAGGCGTG CCACTGGTGG CAAGAAGAAG GCCTGGAGGA
AAAAGAGAAA GTATGAGCTT GGTCGCCAGC CTGCTAACAC TAAGCTGTCA AGCAACAAGA CTGTCAGGAG GATCCGTGTT
AGAGGTGGCA ATGTGAAGTG GAGAGCACTG AGATTGGATA CTGGAAACTA CTCTTGGGGA AGTGAAGCTG TAACTCGCAA
GACTCGTATA CTTGATGTGG TATACAACGC CTCAAACAAT GAGCTTGTGC GTACTCAGAC CCTTGTCAAA AGTGCTATTG
TTCAGGTTGA TGCCGCTCCC TTCAAACAGT GGTATCTTCA GCACTATGGT GTTGACATTG GTAGGAAGAA GAAGACAGCT
GCAAAGAAGG ATTCCGCAGA GGAGGGTGAC GCTGCAGCAG CAGAAGAAGC CAAAAAGAGT AACCATGTGC AAAGAAAACT
AGAAAAGCGC CAGAAGGATC GCAAGCTTGA TGCTCACATT GAGGAGCAGT TTGGTGGTGG TCGTTTACTT GCTTGCATTT
CCTCTCGACC TGGTCAATGT GGCAGATCTG ATGGCTACAT TCTGGAAGGT AAAGAGTTGG AATTTTACAT GAAGAAACTC
CAGAAGAAGA AGGGGAAAGG TGCTGCCTGA 

>Vigan.09G039200.01
MLPSNLSFVD IANENPNSIF SNGISYSSSS ESGISRDSMH KRRATGGKKK AWRKKRKYEL GRQPANTKLS SNKTVRRIRV
RGGNVKWRAL RLDTGNYSWG SEAVTRKTRI LDVVYNASNN ELVRTQTLVK SAIVQVDAAP FKQWYLQHYG VDIGRKKKTA
AKKDSAEEGD AAAAEEAKKS NHVQRKLEKR QKDRKLDAHI EEQFGGGRLL ACISSRPGQC GRSDGYILEG KELEFYMKKL
QKKKGKGAA*